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Aliases for LOC102724020 Gene

Subcategory (RNA class) for LOC102724020 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724020 Gene

  • Uncharacterized LOC102724020 3
  • AC024224.2 5

External Ids for LOC102724020 Gene

Previous GeneCards Identifiers for LOC102724020 Gene

  • GC12M010165
  • GC12M010611
  • GC12M010787
  • GC12M011042
  • GC12M011353
  • GC12M011570
  • GC12M011760

Summaries for LOC102724020 Gene

GeneCards Summary for LOC102724020 Gene

LOC102724020 (Uncharacterized LOC102724020) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724020 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724020 Gene

Genomics for LOC102724020 Gene

GeneHancer (GH) Regulatory Elements for LOC102724020 Gene

Promoters and enhancers for LOC102724020 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I010030 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.0 -963 2.7 STAT1 JUN MAFG BACH1 CBFA2T3 POLR2A GABPB1 NFE2 EMSY CLEC9A LOC102724020 CLEC7A CLEC12B TMEM52B OLR1 CLEC1A STYK1 LOC100421202
GH12I009948 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.1 +81.7 81657 1.1 PKNOX1 BMI1 BATF IRF4 ATF7 ETV6 IKZF2 RUNX3 TRIM22 JUNB CLEC12A CLEC12B CLEC1B CLEC7A CLEC9A LOC102724020 CLEC12A-AS1 LINC02470
GH12I010152 Enhancer 1 Ensembl ENCODE 10 -123.1 -123105 1.8 ZNF2 ZNF48 RAD21 YY1 ZNF335 GLIS2 ZNF143 RUNX3 DEK ZNF202 KLRA1P LOC642846 TAS2R20 GABARAPL1 ENSG00000255958 TAS2R50 ENSG00000256682 DDX12P TAS2R43 TAS2R46
GH12I009947 Enhancer 0.8 ENCODE dbSUPER 10.1 +82.7 82749 0.1 JUNB DPF2 BATF ATF2 IRF4 IKZF1 RUNX3 IKZF2 SPI1 CLEC12B CLEC1B CLEC7A CLEC9A LOC102724020 CLEC12A LINC02470
GH12I010000 Promoter 0.7 EPDnew 10.3 +31.4 31365 0.1 MAFG NFE2 CLEC1B CLEC12A-AS1 CLEC12A LOC102724020 CLEC9A CLEC12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC102724020 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724020 Gene

Genomic Locations for LOC102724020 Gene
chr12:10,015,240-10,030,606
(GRCh38/hg38)
Size:
15,367 bases
Orientation:
Minus strand
chr12:10,167,839-10,183,205
(GRCh37/hg19)

Genomic View for LOC102724020 Gene

Genes around LOC102724020 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724020 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724020 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724020 Gene

Proteins for LOC102724020 Gene

Post-translational modifications for LOC102724020 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724020 Gene

Domains & Families for LOC102724020 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724020 Gene

Function for LOC102724020 Gene

Phenotypes From GWAS Catalog for LOC102724020 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724020 Gene

Localization for LOC102724020 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724020 Gene

Pathways & Interactions for LOC102724020 Gene

SuperPathways for LOC102724020 Gene

No Data Available

Interacting Proteins for LOC102724020 Gene

Gene Ontology (GO) - Biological Process for LOC102724020 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724020 Gene

Drugs & Compounds for LOC102724020 Gene

No Compound Related Data Available

Transcripts for LOC102724020 Gene

mRNA/cDNA for LOC102724020 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724020 Gene

No ASD Table

Relevant External Links for LOC102724020 Gene

GeneLoc Exon Structure for
LOC102724020

Expression for LOC102724020 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724020 Gene

genes like me logo Genes that share expression patterns with LOC102724020: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724020 Gene

Orthologs for LOC102724020 Gene

Evolution for LOC102724020 Gene

ENSEMBL:
Gene Tree for LOC102724020 (if available)
TreeFam:
Gene Tree for LOC102724020 (if available)

No data available for Orthologs for LOC102724020 Gene

Paralogs for LOC102724020 Gene

No data available for Paralogs for LOC102724020 Gene

Variants for LOC102724020 Gene

Sequence variations from dbSNP and Humsavar for LOC102724020 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000016536 -- 10,021,094(-) C/T intron_variant
rs1000160675 -- 10,030,568(-) C/A/T non_coding_transcript_variant
rs1000267693 -- 10,024,207(-) T/C intron_variant
rs1000619876 -- 10,023,992(-) G/A/C intron_variant
rs1000715095 -- 10,029,401(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724020 Gene

Variant ID Type Subtype PubMed ID
dgv1374n100 CNV gain 25217958
esv9698 OTHER inversion 19470904

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724020 Gene

Disorders for LOC102724020 Gene

Additional Disease Information for LOC102724020

No disorders were found for LOC102724020 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724020 Gene

Publications for LOC102724020 Gene

  1. Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease. (PMID: 24058526) Bhatnagar P … Arking DE (PloS one 2013) 3 58
  2. Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy. (PMID: 23834954) Kobayashi D … Fukuda K (Molecular pain 2013) 3 58

Products for LOC102724020 Gene

Sources for LOC102724020 Gene

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