Aliases for LOC102723955 Gene

Aliases for LOC102723955 Gene

  • Phosphodiesterase 4D Interacting Protein Pseudogene 3

External Ids for LOC102723955 Gene

Previous GeneCards Identifiers for LOC102723955 Gene

  • GC01U904032
  • GC01M149679
  • GC01M149682

Summaries for LOC102723955 Gene

GeneCards Summary for LOC102723955 Gene

LOC102723955 (Phosphodiesterase 4D Interacting Protein Pseudogene) is a Pseudogene.

Additional gene information for LOC102723955 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102723955 Gene

Genomics for LOC102723955 Gene

GeneHancer (GH) Regulatory Elements for LOC102723955 Gene

Promoters and enhancers for LOC102723955 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J149746 Promoter/Enhancer 0.7 Ensembl ENCODE 750.6 +1.6 1583 1.6 EZH2 ZBTB33 ENSG00000234232 HG983795 LOC102723955 lnc-HIST2H2BF-3 SV2A FCGR1A TRN-GTT8-1
GH01J149750 Enhancer 0.2 Ensembl 750.6 -0.9 -917 0.2 HG983795 LOC102723955 lnc-HIST2H2BF-3 ENSG00000234232 LOC100129586 lnc-HIST2H2BF-2
GH01J149740 Enhancer 0.5 ENCODE 0.4 +8.9 8898 0.2 ETV6 ATF3 SMARCA5 ZNF217 GATAD2B SIN3A RCOR1 ZBTB40 ZBTB33 TRN-GTT8-1 ENSG00000234232 RF01061-015 lnc-HIST2H2BF-3 LOC102723955 LOC105371406
GH01J149741 Enhancer 0.3 ENCODE 0.4 +8.4 8418 0.2 ETV6 TRN-GTT8-1 ENSG00000234232 lnc-HIST2H2BF-3 LOC102723955
GH01J149751 Enhancer 0.2 Ensembl 0.4 -5.4 -5417 6.4 LOC100129586 lnc-HIST2H2BF-2 ENSG00000234232 SV2A HG983613-002 TRR-CCT8-1 LOC102723955 H2BC18
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102723955 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102723955 Gene

Genomic Locations for LOC102723955 Gene
chr1:149,719,896-149,749,184
(GRCh38/hg38)
Size:
29,289 bases
Orientation:
Minus strand

Genomic View for LOC102723955 Gene

Genes around LOC102723955 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102723955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102723955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102723955 Gene

Proteins for LOC102723955 Gene

Post-translational modifications for LOC102723955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102723955 Gene

Domains & Families for LOC102723955 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102723955 Gene

Function for LOC102723955 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102723955 Gene

Localization for LOC102723955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102723955 Gene

Pathways & Interactions for LOC102723955 Gene

PathCards logo

SuperPathways for LOC102723955 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102723955 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102723955 Gene

Drugs & Compounds for LOC102723955 Gene

No Compound Related Data Available

Transcripts for LOC102723955 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102723955 Gene

No ASD Table

Relevant External Links for LOC102723955 Gene

GeneLoc Exon Structure for
LOC102723955

No data available for mRNA/cDNA for LOC102723955 Gene

Expression for LOC102723955 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102723955 Gene

genes like me logo Genes that share expression patterns with LOC102723955: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102723955 Gene

Orthologs for LOC102723955 Gene

This gene was present in the common ancestor of mammals.

Orthologs for LOC102723955 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC749061 32
  • 92.59 (n)
cow
(Bos Taurus)
Mammalia LOC788142 32
  • 75.69 (n)
dog
(Canis familiaris)
Mammalia LOC475831 32
  • 75.49 (n)
Species where no ortholog for LOC102723955 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LOC102723955 Gene

Paralogs for LOC102723955 Gene

No data available for Paralogs for LOC102723955 Gene

Variants for LOC102723955 Gene

Sequence variations from dbSNP and Humsavar for LOC102723955 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10158358 -- 149,750,345(-) C/T upstream_transcript_variant
rs10158613 -- 149,750,534(-) A/T upstream_transcript_variant
rs10494258 -- 149,741,194(-) A/G genic_upstream_transcript_variant, intron_variant
rs10570917 -- 149,749,771(-) TGTAATGTAA/TGTAA upstream_transcript_variant
rs10650841 -- 149,731,331(-) AAAAAAAAAAA/AAAAAAAAAA/AAAAAAAAAAAA/AAAAAAAAAAAAA/AAAAAAAAAAAAAA genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102723955 Gene

Disorders for LOC102723955 Gene

No disorders were found for LOC102723955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102723955 Gene

Publications for LOC102723955 Gene

No publications were found for LOC102723955 Gene.

No data available for External Links for LOC102723955 Gene

Products for LOC102723955 Gene

Sources for LOC102723955 Gene