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Aliases for LOC102723878 Gene

Subcategory (RNA class) for LOC102723878 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102723878 Gene

  • Uncharacterized LOC102723878 3

External Ids for LOC102723878 Gene

Previous GeneCards Identifiers for LOC102723878 Gene

  • GC11U902135

Summaries for LOC102723878 Gene

GeneCards Summary for LOC102723878 Gene

LOC102723878 (Uncharacterized LOC102723878) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102723878 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102723878 Gene

Genomics for LOC102723878 Gene

GeneHancer (GH) Regulatory Elements for LOC102723878 Gene

Promoters and enhancers for LOC102723878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J064338 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.4 -448 4.4 HDGF ZNF652 SP1 ZFX CBFA2T2 NKRF MLLT1 POLR2A ZNF687 AHR CCDC88B LOC102723878 MIR7155 ENSG00000236935 PLCB3 TRMT112
GH11J064331 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 0.4 +8.7 8732 1.7 ZNF473 MTA3 ZNF652 ZFX CC2D1A ELF3 CTCF MLLT1 GTF2F1 ZNF687 GC11P064331 GC11P064330 POLA2 SF1 PLCB3 ZFPL1 ENSG00000257086 FAU ATG2A ZNHIT2
GH11J064334 Enhancer 1.5 FANTOM5 Ensembl ENCODE 0.4 +5.0 5024 2.8 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 ZNF121 CEBPG GTF2F1 BACH1 MAFK ENSG00000236935 SF1 POLA2 ZFPL1 SYVN1 FAU PLCB3 ATG2A NAALADL1 CCDC88B
GH11J064320 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +17.5 17505 5.3 PRDM1 EGR1 DPF2 ZIC2 MTA2 NR2C1 TARDBP ZBTB2 ZKSCAN1 GLIS1 PLCB3 ENSG00000236935 CATSPERZ ENSG00000207024 KCNK4 ENSG00000257069 BAD GPR137 ENSG00000257086 TRMT112
GH11J064329 Enhancer 0.6 ENCODE dbSUPER 0.4 +10.8 10756 0.8 NR2F2 ZNF189 CTCF ENSG00000236935 GC11P064330 GC11P064331 LOC102723878
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102723878 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102723878 Gene

Genomic Locations for LOC102723878 Gene
chr11:64,325,050-64,340,625
(GRCh38/hg38)
Size:
15,576 bases
Orientation:
Minus strand

Genomic View for LOC102723878 Gene

Genes around LOC102723878 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102723878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102723878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102723878 Gene

Proteins for LOC102723878 Gene

Post-translational modifications for LOC102723878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102723878 Gene

Domains & Families for LOC102723878 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102723878 Gene

Function for LOC102723878 Gene

Phenotypes From GWAS Catalog for LOC102723878 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102723878 Gene

Localization for LOC102723878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102723878 Gene

Pathways & Interactions for LOC102723878 Gene

PathCards logo

SuperPathways for LOC102723878 Gene

No Data Available

Interacting Proteins for LOC102723878 Gene

Gene Ontology (GO) - Biological Process for LOC102723878 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102723878 Gene

Drugs & Compounds for LOC102723878 Gene

No Compound Related Data Available

Transcripts for LOC102723878 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102723878 Gene

No ASD Table

Relevant External Links for LOC102723878 Gene

GeneLoc Exon Structure for
LOC102723878

No data available for mRNA/cDNA for LOC102723878 Gene

Expression for LOC102723878 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102723878 Gene

Orthologs for LOC102723878 Gene

No data available for Orthologs and Evolution for LOC102723878 Gene

Paralogs for LOC102723878 Gene

No data available for Paralogs for LOC102723878 Gene

Variants for LOC102723878 Gene

Sequence variations from dbSNP and Humsavar for LOC102723878 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000099960 -- 64,335,534(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000167890 -- 64,342,443(-) C/T upstream_transcript_variant
rs1000814111 -- 64,337,863(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000929792 -- 64,337,485(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000964094 -- 64,337,703(-) C/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102723878 Gene

Disorders for LOC102723878 Gene

No disorders were found for LOC102723878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102723878 Gene

Publications for LOC102723878 Gene

  1. Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy. (PMID: 25642632) Liu H … Zhang F (Nature genetics 2015) 3 58
  2. A novel sarcoidosis risk locus for Europeans on chromosome 11q13.1. (PMID: 22837380) Fischer A … Schreiber S (American journal of respiratory and critical care medicine 2012) 3 58
  3. Genome-wide association study in alopecia areata implicates both innate and adaptive immunity. (PMID: 20596022) Petukhova L … Christiano AM (Nature 2010) 3 58
  4. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. (PMID: 21102463) Franke A … Parkes M (Nature genetics 2010) 3 58

No data available for External Links for LOC102723878 Gene

Products for LOC102723878 Gene

Sources for LOC102723878 Gene

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