Aliases for LOC102723692 Gene

Subcategory (RNA class) for LOC102723692 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC102723692 Gene

  • Uncharacterized LOC102723692 3
  • Novel Transcript, Antisense To XYLT1 5
  • NONHSAG018742.2 91
  • AC109446.3 5

External Ids for LOC102723692 Gene

Additional External Ids for LOC102723692 Gene

Previous GeneCards Identifiers for LOC102723692 Gene

  • GC16U901800

Summaries for LOC102723692 Gene

GeneCards Summary for LOC102723692 Gene

LOC102723692 (Uncharacterized LOC102723692) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC102723692 include Desbuquois Dysplasia 2 and Desbuquois Dysplasia 1.

Additional gene information for LOC102723692 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102723692 Gene

Genomics for LOC102723692 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102723692 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J017154 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 +20.9 20897 4 ATF7 KDM1A NFE2 MAFG BCOR ATF2 BHLHE40 ZMYM3 GATA2 SPI1 XYLT1 LOC102723692 ENSG00000279410 NPIPA7
GH16J017130 Enhancer 0.5 Ensembl 0.7 -3.7 -3703 2 CTCF ZNF316 MAFF MAFK SPI1 RAD21 EMSY LOC102723692 lnc-ABCC6-11 XYLT1 NPIPA7
GH16J017170 Enhancer 0.9 FANTOM5 ENCODE 0.3 +36.9 36930 1.5 GATAD2A RXRB SP1 CEBPA FOXA2 ATF3 YY1 EP300 ZBTB33 JUND XYLT1 ENSG00000279410 LOC102723692 NPIPA7
GH16J017172 Enhancer 0.9 FANTOM5 ENCODE 0.3 +39.0 39012 1.3 REST SP1 CEBPA CEBPB ETS1 RUNX3 FOXA2 YY1 GABPA ZBTB33 XYLT1 ENSG00000279410 LOC102723692 NPIPA7
GH16J017176 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.3 +43.7 43699 3.2 REST POLR2A MIER1 EHMT2 HCFC1 MAFK JUND FOS MIER2 XYLT1 ENSG00000279410 LOC102723692 NPIPA7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102723692 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102723692 Gene

Genomic Locations for LOC102723692 Gene
chr16:17,134,504-17,138,736
(GRCh38/hg38)
Size:
4,233 bases
Orientation:
Plus strand

Genomic View for LOC102723692 Gene

Genes around LOC102723692 on UCSC Golden Path with GeneCards custom track
LOC102723692 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102723692 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102723692 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102723692 Gene

Proteins for LOC102723692 Gene

Post-translational modifications for LOC102723692 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102723692 Gene

Domains & Families for LOC102723692 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102723692 Gene

Function for LOC102723692 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102723692 Gene

Localization for LOC102723692 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102723692 Gene

Pathways & Interactions for LOC102723692 Gene

PathCards logo

SuperPathways for LOC102723692 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102723692 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102723692 Gene

Drugs & Compounds for LOC102723692 Gene

No Compound Related Data Available

Transcripts for LOC102723692 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102723692 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002A87B6_9606 lncRNA 641 2

Ensembl: ENST00000567344 (view in UCSC) , ENST00000643315 (view in UCSC) ,

NONCODE: NONHSAT140815.2,

URS0000A76C23_9606 lncRNA 637 1

RefSeq: NR_135179,

LOC102723692 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102723692 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102723692 Gene

No ASD Table

Relevant External Links for LOC102723692 Gene

GeneLoc Exon Structure for
LOC102723692

Expression for LOC102723692 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102723692 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102723692

genes like me logo Genes that share expression patterns with LOC102723692: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102723692 Gene

Orthologs for LOC102723692 Gene

Evolution for LOC102723692 Gene

ENSEMBL:
Gene Tree for LOC102723692 (if available)
TreeFam:
Gene Tree for LOC102723692 (if available)

No data available for Orthologs for LOC102723692 Gene

Paralogs for LOC102723692 Gene

No data available for Paralogs for LOC102723692 Gene

Variants for LOC102723692 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC102723692 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
650727 Uncertain Significance: Desbuquois dysplasia 1 17,134,687(+) T/A MISSENSE_VARIANT
652797 Uncertain Significance: Desbuquois dysplasia 1 17,134,518(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
662990 Uncertain Significance: Desbuquois dysplasia 1 17,134,510(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
715275 Likely Benign: Desbuquois dysplasia 1 17,138,377(+) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
719612 Likely Benign: Desbuquois dysplasia 1 17,138,517(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC102723692 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102723692 Gene

Disorders for LOC102723692 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LOC102723692 Gene - From: GeneCards

Disorder Aliases PubMed IDs
desbuquois dysplasia 2
  • dbqd2
desbuquois dysplasia 1
  • dbqd1
desbuquois dysplasia
  • desbuquois syndrome
pseudoxanthoma elasticum
  • pxe
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102723692: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102723692 Gene

Publications for LOC102723692 Gene

No publications were found for LOC102723692 Gene.

No data available for Mastermind for LOC102723692 Gene

Products for LOC102723692 Gene

Sources for LOC102723692 Gene