Aliases for LOC102723566 Gene

Subcategory (RNA class) for LOC102723566 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC102723566 Gene

  • Uncharacterized LOC102723566 3
  • Novel Transcript 5
  • NONHSAG053500.2 91
  • HSALNG0074541 164
  • AL162586.1 5

External Ids for LOC102723566 Gene

Previous GeneCards Identifiers for LOC102723566 Gene

  • GC09U902061

Summaries for LOC102723566 Gene

GeneCards Summary for LOC102723566 Gene

LOC102723566 (Uncharacterized LOC102723566) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC102723566 include Gastric Cancer and Pulmonary Arteriovenous Malformation.

Additional gene information for LOC102723566 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102723566 Gene

Genomics for LOC102723566 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102723566 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102723566 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102723566 Gene

Genomic Locations for LOC102723566 Gene
chr9:127,816,066-127,822,521
(GRCh38/hg38)
Size:
6,456 bases
Orientation:
Plus strand

Genomic View for LOC102723566 Gene

Genes around LOC102723566 on UCSC Golden Path with GeneCards custom track
LOC102723566 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102723566 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102723566 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102723566 Gene

Proteins for LOC102723566 Gene

Post-translational modifications for LOC102723566 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102723566 Gene

Domains & Families for LOC102723566 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102723566 Gene

Function for LOC102723566 Gene

Phenotypes From GWAS Catalog for LOC102723566 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102723566 Gene

Localization for LOC102723566 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102723566 Gene

Pathways & Interactions for LOC102723566 Gene

PathCards logo

SuperPathways for LOC102723566 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102723566 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102723566 Gene

Drugs & Compounds for LOC102723566 Gene

No Compound Related Data Available

Transcripts for LOC102723566 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102723566 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042101B_9606 lncRNA 2055 3

RefSeq: NR_136302,

Ensembl: ENST00000439298 (view in UCSC) ,

NONCODE: NONHSAT134850.2,

URS00003303BA_9606 lncRNA 521 3

Ensembl: ENST00000425991 (view in UCSC) ,

LncBook: HSALNT0155595,

NONCODE: NONHSAT134852.2,

URS00009B046E_9606 lncRNA 2247 1

NONCODE: NONHSAT220200.1,

LOC102723566 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102723566 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102723566 Gene

No ASD Table

Relevant External Links for LOC102723566 Gene

GeneLoc Exon Structure for
LOC102723566

Expression for LOC102723566 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102723566 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102723566

genes like me logo Genes that share expression patterns with LOC102723566: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102723566 Gene

Orthologs for LOC102723566 Gene

Evolution for LOC102723566 Gene

ENSEMBL:
Gene Tree for LOC102723566 (if available)
TreeFam:
Gene Tree for LOC102723566 (if available)

No data available for Orthologs for LOC102723566 Gene

Paralogs for LOC102723566 Gene

No data available for Paralogs for LOC102723566 Gene

Variants for LOC102723566 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC102723566 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
571701 Pathogenic: Hereditary hemorrhagic telangiectasia type 1 127,817,279(+) CCAGCCCACCCTAGAG SPLICE_ACCEPTOR_VARIANT,SPLICE_DONOR_VARIANT
639827 Uncertain Significance: Hereditary hemorrhagic telangiectasia 127,820,003(+) CAGA/C INFRAME_DELETION
642861 Pathogenic: Hereditary hemorrhagic telangiectasia 127,819,924(+) C/CA FRAMESHIFT_VARIANT
651394 Pathogenic: Hereditary hemorrhagic telangiectasia 127,818,122(+) G/A NONSENSE
652180 Uncertain Significance: Hereditary hemorrhagic telangiectasia 127,819,659(+) G/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LOC102723566 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102723566 Gene

Disorders for LOC102723566 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC102723566 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
pulmonary arteriovenous malformation
  • pulmonary arteriovenous fistula
pulmonary arterial hypertension associated with congenital heart disease
  • pah associated with congenital heart disease
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102723566: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102723566 Gene

Publications for LOC102723566 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC102723566 Gene

Products for LOC102723566 Gene

Sources for LOC102723566 Gene