Aliases for LOC102723517 Gene

Data sources for LOC102723517 Gene:

Subcategory (RNA class) for LOC102723517 Gene

lncRNA

Aliases for LOC102723517 Gene

External Ids for LOC102723517 Gene

Previous GeneCards Identifiers for LOC102723517 Gene

  • GC17M072033

Summaries for LOC102723517 Gene

GeneCards Summary for LOC102723517 Gene

LOC102723517 (Uncharacterized LOC102723517) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102723517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102723517 Gene

Genomics for LOC102723517 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102723517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072058 Promoter 0.3 Ensembl 250.7 -0.4 -367 0.6 ROCR HSALNG0118530 LOC102723517 SOX9 ENSG00000288605 SOX9-AS1
GH17J072033 Enhancer 0.7 Ensembl 0.3 +23.4 23433 1 SP1 BCL11A TRIM22 IRF4 CBFB RFX5 BATF NFATC1 IKZF1 ATF2 ROCR LINC01152 piR-38351-219 LOC102723517 SOX9 ENSG00000288605
GH17J072056 Enhancer 0.2 Ensembl 0.7 +3.2 3233 0.2 ROCR LOC102723517 piR-38351-219 SOX9 ENSG00000288605 SOX9-AS1
GH17J072054 Enhancer 0.2 Ensembl 0.7 +4.0 3968 0.5 LOC102723517 ROCR piR-38351-219 SOX9 ENSG00000288605 SOX9-AS1
GH17J072047 Enhancer 0.3 Ensembl 0.4 +10.5 10533 0.4 ZIC2 ROCR piR-38351-219 LOC102723517 SOX9 ENSG00000288605 SOX9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102723517 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102723517 Gene

Latest Assembly
chr17:72,034,106-72,057,734
(GRCh38/hg38)
Size:
23,629 bases
Orientation:
Minus strand

Previous Assembly
chr17:70,030,248-70,053,875
(GRCh37/hg19 by Entrez Gene)
Size:
23,628 bases
Orientation:
Minus strand

Genomic View for LOC102723517 Gene

Genes around LOC102723517 on UCSC Golden Path with GeneCards custom track
LOC102723517 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC102723517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102723517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102723517 Gene

Proteins for LOC102723517 Gene

Post-translational modifications for LOC102723517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102723517 Gene

Domains & Families for LOC102723517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102723517 Gene

Function for LOC102723517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102723517 Gene

Localization for LOC102723517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102723517 Gene

Pathways & Interactions for LOC102723517 Gene

PathCards logo

SuperPathways for LOC102723517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102723517 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102723517 Gene

Drugs & Compounds for LOC102723517 Gene

No Compound Related Data Available

Transcripts for LOC102723517 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102723517 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A2A5_9606 lncRNA 585 3

RefSeq: NR_110877,

LncBook: HSALNT0244785,

LNCipedia: lnc-SLC39A11-10:42,

URS00008B7BB2_9606 lncRNA 5838 3

LncBook: HSALNT0244783,

LNCipedia: lnc-SLC39A11-10:48,

NONCODE: NONHSAT055643.2,

URS00008B8EF5_9606 lncRNA 2051 3

LncBook: HSALNT0244766,

LNCipedia: lnc-SLC39A11-10:50,

NONCODE: NONHSAT055639.2,

URS00009AF450_9606 lncRNA 961 3

LncBook: HSALNT0244793,

LNCipedia: lnc-SLC39A11-10:47,

NONCODE: NONHSAT176531.1,

URS00008B2621_9606 lncRNA 886 3

LncBook: HSALNT0244764,

LNCipedia: lnc-SLC39A11-10:49,

NONCODE: NONHSAT055638.2,

LOC102723517 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102723517 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102723517 Gene

No ASD Table

Relevant External Links for LOC102723517 Gene

GeneLoc Exon Structure for
LOC102723517

Expression for LOC102723517 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102723517 Gene

Orthologs for LOC102723517 Gene

No data available for Orthologs and Evolution for LOC102723517 Gene

Paralogs for LOC102723517 Gene

No data available for Paralogs for LOC102723517 Gene

Variants for LOC102723517 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC102723517 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC102723517 Gene

Variant ID Type Subtype PubMed ID
esv3573809 CNV gain 25503493
nsv833530 CNV gain+loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102723517 Gene

Disorders for LOC102723517 Gene

No disorders were found for LOC102723517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102723517 Gene

Publications for LOC102723517 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3

No data available for Mastermind for LOC102723517 Gene

Products for LOC102723517 Gene

Sources for LOC102723517 Gene