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Aliases for LOC102606466 Gene

Subcategory (RNA class) for LOC102606466 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102606466 Gene

  • Uncharacterized LOC102606466 3

External Ids for LOC102606466 Gene

Previous GeneCards Identifiers for LOC102606466 Gene

  • GC20U900830

Summaries for LOC102606466 Gene

GeneCards Summary for LOC102606466 Gene

LOC102606466 (Uncharacterized LOC102606466) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102606466 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102606466 Gene

Genomics for LOC102606466 Gene

GeneHancer (GH) Regulatory Elements for LOC102606466 Gene

Promoters and enhancers for LOC102606466 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J012936 Enhancer 0.6 Ensembl 600.7 +0.3 276 1.3 RFX1 RFX3 BMI1 FOXA2 FOSL2 SIN3A RFX5 MXI1 FOS MNT ENSG00000286087 LOC105372535 LOC102606466 ENSG00000269931 LINC01723 LINC01722
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102606466 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102606466 Gene

Genomic Locations for LOC102606466 Gene
chr20:12,934,877-12,936,963
(GRCh38/hg38)
Size:
2,087 bases
Orientation:
Minus strand

Genomic View for LOC102606466 Gene

Genes around LOC102606466 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102606466 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102606466 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102606466 Gene

Proteins for LOC102606466 Gene

Post-translational modifications for LOC102606466 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102606466 Gene

Domains & Families for LOC102606466 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102606466 Gene

Function for LOC102606466 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102606466 Gene

Localization for LOC102606466 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102606466 Gene

Pathways & Interactions for LOC102606466 Gene

PathCards logo

SuperPathways for LOC102606466 Gene

No Data Available

Interacting Proteins for LOC102606466 Gene

Gene Ontology (GO) - Biological Process for LOC102606466 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102606466 Gene

Drugs & Compounds for LOC102606466 Gene

No Compound Related Data Available

Transcripts for LOC102606466 Gene

mRNA/cDNA for LOC102606466 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102606466 Gene

No ASD Table

Relevant External Links for LOC102606466 Gene

GeneLoc Exon Structure for
LOC102606466

Expression for LOC102606466 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102606466 Gene

Orthologs for LOC102606466 Gene

No data available for Orthologs and Evolution for LOC102606466 Gene

Paralogs for LOC102606466 Gene

No data available for Paralogs for LOC102606466 Gene

Variants for LOC102606466 Gene

Sequence variations from dbSNP and Humsavar for LOC102606466 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000581116 -- 12,936,952(-) T/C non_coding_transcript_variant
rs1001809106 -- 12,936,201(-) C/A intron_variant
rs1002026825 -- 12,937,854(-) A/C upstream_transcript_variant
rs1002911826 -- 12,935,598(-) G/T intron_variant
rs1003812343 -- 12,938,802(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102606466 Gene

Variant ID Type Subtype PubMed ID
dgv4247n100 CNV gain 25217958
esv2751905 CNV gain 17911159
esv3645276 CNV loss 21293372
esv3645277 CNV gain 21293372
esv3893288 CNV gain 25118596
nsv518184 CNV gain 19592680
nsv7339 OTHER inversion 18451855
nsv833923 CNV gain+loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102606466 Gene

Disorders for LOC102606466 Gene

No disorders were found for LOC102606466 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102606466 Gene

Publications for LOC102606466 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC102606466 Gene

Products for LOC102606466 Gene

Sources for LOC102606466 Gene

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