Aliases for LOC102546299 Gene

Subcategory (RNA class) for LOC102546299 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC102546299 Gene

  • Uncharacterized LOC102546299 3
  • HSALNG0046349 167
  • NONHSAG042145 92
  • CTC-340A15.2 3
  • Lnc-MAT2B-3 168

External Ids for LOC102546299 Gene

Previous GeneCards Identifiers for LOC102546299 Gene

  • GC05P163725
  • GC05P164296

Summaries for LOC102546299 Gene

GeneCards Summary for LOC102546299 Gene

LOC102546299 (Uncharacterized LOC102546299) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102546299 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102546299 Gene

Genomics for LOC102546299 Gene

GeneHancer (GH) Regulatory Elements for LOC102546299 Gene

Promoters and enhancers for LOC102546299 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J164498 Enhancer 0.6 Ensembl ENCODE 0.3 +28.0 28022 3.4 NANOG MAFK CHD7 POU5F1 POLR2A ENSG00000241956 LINC02143 LOC102546299 ENSG00000253600
GH05J164503 Enhancer 0.7 Ensembl 0.3 +34.2 34221 0.2 CTCF REST RAD21 TRIM22 SMC3 PBX2 GATA3 PKNOX1 ZNF654 MEIS2 LOC102546299 ENSG00000253600 ENSG00000241956
GH05J164518 Enhancer 0.3 Ensembl 0.3 +48.6 48622 0.2 TCF7L2 LOC102546299 ENSG00000253600 ENSG00000241956
GH05J164532 Enhancer 0.3 Ensembl 0.2 +62.7 62722 1.2 MXI1 FOS ENSG00000241956 LOC102546299 ENSG00000253600
GH05J164600 Enhancer 0.4 ENCODE 0.1 +130.3 130291 0.2 FOS CEBPB STAT3 NFE2L2 MYC ENSG00000253600 RPS15P6 LOC102546299 ENSG00000241956
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102546299 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102546299 Gene

Genomic Locations for LOC102546299 Gene
chr5:164,470,279-164,542,984
(GRCh38/hg38)
Size:
72,706 bases
Orientation:
Plus strand
chr5:163,723,702-164,598,649
(GRCh37/hg19)
Size:
874,948 bases
Orientation:
Plus strand

Genomic View for LOC102546299 Gene

Genes around LOC102546299 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102546299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102546299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102546299 Gene

Proteins for LOC102546299 Gene

Post-translational modifications for LOC102546299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102546299 Gene

Domains & Families for LOC102546299 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102546299 Gene

Function for LOC102546299 Gene

Phenotypes From GWAS Catalog for LOC102546299 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102546299 Gene

Localization for LOC102546299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102546299 Gene

Pathways & Interactions for LOC102546299 Gene

PathCards logo

SuperPathways for LOC102546299 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC102546299 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102546299 Gene

Drugs & Compounds for LOC102546299 Gene

No Compound Related Data Available

Transcripts for LOC102546299 Gene

mRNA/cDNA for LOC102546299 Gene

22 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
14 LncBook transcripts :
20 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102546299 Gene

No ASD Table

Relevant External Links for LOC102546299 Gene

GeneLoc Exon Structure for
LOC102546299

Expression for LOC102546299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102546299 Gene

mRNA differential expression in normal tissues according to GTEx for LOC102546299 Gene

This gene is overexpressed in Testis (x16.7), Pituitary (x9.2), Brain - Nucleus accumbens (basal ganglia) (x7.1), and Brain - Caudate (basal ganglia) (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102546299

genes like me logo Genes that share expression patterns with LOC102546299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102546299 Gene

Orthologs for LOC102546299 Gene

No data available for Orthologs and Evolution for LOC102546299 Gene

Paralogs for LOC102546299 Gene

No data available for Paralogs for LOC102546299 Gene

Variants for LOC102546299 Gene

Additional dbSNP identifiers (rs#s) for LOC102546299 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102546299 Gene

Variant ID Type Subtype PubMed ID
esv2667417 CNV deletion 23128226
esv2760959 CNV gain+loss 21179565
esv3607476 CNV gain 21293372
esv3607477 CNV loss 21293372
nsv473013 CNV novel sequence insertion 20440878

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102546299 Gene

Disorders for LOC102546299 Gene

No disorders were found for LOC102546299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102546299 Gene

Publications for LOC102546299 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC102546299 Gene

Products for LOC102546299 Gene

Sources for LOC102546299 Gene