Aliases for LOC102546299 Gene

Subcategory (RNA class) for LOC102546299 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC102546299 Gene

  • Uncharacterized LOC102546299 3
  • NONHSAG042145.2 91
  • HSALNG0046349 164
  • CTC-340A15.2 3
  • Lnc-MAT2B-3 165

External Ids for LOC102546299 Gene

Previous GeneCards Identifiers for LOC102546299 Gene

  • GC05P163725
  • GC05P164470

Summaries for LOC102546299 Gene

GeneCards Summary for LOC102546299 Gene

LOC102546299 (Uncharacterized LOC102546299) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC102546299 include Retinitis Pigmentosa 11 and Retinitis Pigmentosa.

Additional gene information for LOC102546299 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102546299 Gene

Genomics for LOC102546299 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102546299 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102546299 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102546299 Gene

Genomic Locations for LOC102546299 Gene
chr5:164,296,697-165,171,644
(GRCh38/hg38)
Size:
874,948 bases
Orientation:
Plus strand
chr5:163,723,702-164,598,649
(GRCh37/hg19)
Size:
874,948 bases
Orientation:
Plus strand

Genomic View for LOC102546299 Gene

Genes around LOC102546299 on UCSC Golden Path with GeneCards custom track
LOC102546299 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102546299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102546299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102546299 Gene

Proteins for LOC102546299 Gene

Post-translational modifications for LOC102546299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102546299 Gene

Domains & Families for LOC102546299 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102546299 Gene

Function for LOC102546299 Gene

Phenotypes From GWAS Catalog for LOC102546299 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102546299 Gene

Localization for LOC102546299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102546299 Gene

Pathways & Interactions for LOC102546299 Gene

PathCards logo

SuperPathways for LOC102546299 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102546299 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102546299 Gene

Drugs & Compounds for LOC102546299 Gene

No Compound Related Data Available

Transcripts for LOC102546299 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102546299 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000387908_9606 lncRNA 583 5

RefSeq: NR_105065,

Ensembl: ENST00000522762 (view in UCSC) ,

LncBook: HSALNT0097212,

LNCipedia: lnc-MAT2B-3:16,

NONCODE: NONHSAT104940.2,

URS00003824C5_9606 lncRNA 541 3

LncBook: HSALNT0097192,

LNCipedia: lnc-MAT2B-3:10,

NONCODE: NONHSAT104932.2,

URS00008BEDA8_9606 lncRNA 494 3

LncBook: HSALNT0097210,

LNCipedia: lnc-MAT2B-3:15,

NONCODE: NONHSAT104939.2,

URS0000D57DBF_9606 lncRNA 2276 2

LncBook: HSALNT0097177,

LNCipedia: lnc-MAT2B-3:24,

URS0000D5BFB3_9606 lncRNA 2271 2

LncBook: HSALNT0097176,

LNCipedia: lnc-MAT2B-3:23,

LOC102546299 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102546299 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102546299 Gene

No ASD Table

Relevant External Links for LOC102546299 Gene

GeneLoc Exon Structure for
LOC102546299

Expression for LOC102546299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102546299 Gene

mRNA differential expression in normal tissues according to GTEx for LOC102546299 Gene

This gene is overexpressed in Testis (x16.7), Pituitary (x9.2), Brain - Nucleus accumbens (basal ganglia) (x7.1), and Brain - Caudate (basal ganglia) (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102546299

genes like me logo Genes that share expression patterns with LOC102546299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102546299 Gene

Orthologs for LOC102546299 Gene

No data available for Orthologs and Evolution for LOC102546299 Gene

Paralogs for LOC102546299 Gene

No data available for Paralogs for LOC102546299 Gene

Variants for LOC102546299 Gene

Additional dbSNP identifiers (rs#s) for LOC102546299 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102546299 Gene

Variant ID Type Subtype PubMed ID
esv2667417 CNV deletion 23128226
esv2760959 CNV gain+loss 21179565
esv3607476 CNV gain 21293372
esv3607477 CNV loss 21293372
nsv473013 CNV novel sequence insertion 20440878

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102546299 Gene

Disorders for LOC102546299 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC102546299 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102546299: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102546299 Gene

Publications for LOC102546299 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC102546299 Gene

Products for LOC102546299 Gene

Sources for LOC102546299 Gene