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Aliases for LOC102546294 Gene

Subcategory (RNA class) for LOC102546294 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102546294 Gene

  • Uncharacterized LOC102546294 3

External Ids for LOC102546294 Gene

Summaries for LOC102546294 Gene

GeneCards Summary for LOC102546294 Gene

LOC102546294 (Uncharacterized LOC102546294) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102546294 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102546294 Gene

Genomics for LOC102546294 Gene

GeneHancer (GH) Regulatory Elements for LOC102546294 Gene

Promoters and enhancers for LOC102546294 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J148382 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.3 -251 5 ZFX ELF3 SIX5 ZNF148 NKRF POLR2A MLLT1 CEBPG GTF2F1 ZNF687 FBXO38 LOC102546294 ENSG00000247199 SPINK7 ENSG00000251330 ENSG00000274799
GH05J148372 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +10.2 10249 3.2 CTCF CEBPG ZSCAN21 PPARG ZNF644 RAD21 KAT8 HMG20B RXRA CEBPA SPINK7 SPINK6 ADRB2 FBXO38 LOC102546294 ENSG00000283653 ENSG00000247199
GH05J148378 Enhancer 0.6 Ensembl dbSUPER 0.7 +4.1 4050 1.2 GATA3 JUN SPINK7 ENSG00000247199 LOC102546294 ENSG00000283653
GH05J148319 Promoter 1.5 EPDnew Ensembl 0.2 +63.3 63250 1.6 TFE3 GLIS2 ZNF600 ZNF501 ZBTB10 ZBTB48 RAD51 USF1 FOXA2 GATAD1 SPINK9 SPINK7 ENSG00000251330 LOC102546294 ENSG00000247199
GH05J148342 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +40.5 40471 2 CBFA2T2 JUND MAX EHMT2 ZBED1 NR2F1 NCOR1 TCF12 TAL1 TEAD4 SPINK7 SPINK9 FBXO38 ENSG00000247199 SPINK14 ENSG00000283653 LOC102546294
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102546294 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102546294 Gene

Genomic Locations for LOC102546294 Gene
chr5:148,268,307-148,383,850
(GRCh38/hg38)
Size:
115,544 bases
Orientation:
Minus strand

Genomic View for LOC102546294 Gene

Genes around LOC102546294 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102546294 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102546294 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102546294 Gene

Proteins for LOC102546294 Gene

Post-translational modifications for LOC102546294 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102546294 Gene

Domains & Families for LOC102546294 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102546294 Gene

Function for LOC102546294 Gene

Phenotypes From GWAS Catalog for LOC102546294 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102546294 Gene

Localization for LOC102546294 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102546294 Gene

Pathways & Interactions for LOC102546294 Gene

PathCards logo

SuperPathways for LOC102546294 Gene

No Data Available

Interacting Proteins for LOC102546294 Gene

Gene Ontology (GO) - Biological Process for LOC102546294 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102546294 Gene

Drugs & Compounds for LOC102546294 Gene

No Compound Related Data Available

Transcripts for LOC102546294 Gene

mRNA/cDNA for LOC102546294 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102546294 Gene

No ASD Table

Relevant External Links for LOC102546294 Gene

GeneLoc Exon Structure for
LOC102546294

Expression for LOC102546294 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102546294 Gene

Orthologs for LOC102546294 Gene

No data available for Orthologs and Evolution for LOC102546294 Gene

Paralogs for LOC102546294 Gene

No data available for Paralogs for LOC102546294 Gene

Variants for LOC102546294 Gene

Sequence variations from dbSNP and Humsavar for LOC102546294 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000019494 -- 148,329,095(-) G/T intron_variant
rs1000036394 -- 148,350,878(-) A/C intron_variant
rs1000060844 -- 148,325,021(-) A/C intron_variant
rs1000064734 -- 148,282,744(-) C/T intron_variant
rs1000073323 -- 148,350,360(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102546294 Gene

Variant ID Type Subtype PubMed ID
dgv10111n54 CNV gain 21841781
dgv1144e214 CNV loss 21293372
dgv726n27 CNV gain 19166990
esv24060 CNV loss 19812545
esv2674346 CNV deletion 23128226
esv26939 CNV loss 19812545
esv3607102 CNV loss 21293372
esv3607106 CNV loss 21293372
esv3607107 CNV gain 21293372
esv3607113 CNV gain 21293372
nsv5058 CNV insertion 18451855
nsv599945 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102546294 Gene

Disorders for LOC102546294 Gene

No disorders were found for LOC102546294 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102546294 Gene

Publications for LOC102546294 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC102546294 Gene

Products for LOC102546294 Gene

Sources for LOC102546294 Gene

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