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Aliases for LOC102546229 Gene

Subcategory (RNA class) for LOC102546229 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102546229 Gene

  • Uncharacterized LOC102546229 3

External Ids for LOC102546229 Gene

Previous GeneCards Identifiers for LOC102546229 Gene

  • GC05M133766

Summaries for LOC102546229 Gene

GeneCards Summary for LOC102546229 Gene

LOC102546229 (Uncharacterized LOC102546229) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102546229 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102546229 Gene

Genomics for LOC102546229 Gene

GeneHancer (GH) Regulatory Elements for LOC102546229 Gene

Promoters and enhancers for LOC102546229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J134432 Enhancer 0.5 Ensembl 0.7 +2.1 2147 0.6 SP1 ZNF341 FOXA2 FOSL1 FOXP1 HNF4A EBF1 LOC102546229 ENSG00000243648 ENSG00000250564 GC05P134014
GH05J134427 Enhancer 0.8 FANTOM5 ENCODE 0.4 +6.7 6683 2.3 SP1 ZNF121 POLR2A ETS1 NANOG POU5F1 ENSG00000248559 RNU6-456P JADE2 ENSG00000243648 LOC102546229 ENSG00000250564 GC05P134014
GH05J134429 Enhancer 0.2 ENCODE 0.4 +5.1 5054 0.9 ENSG00000243648 LOC102546229 ENSG00000250564 GC05P134014
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102546229 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102546229 Gene

Genomic Locations for LOC102546229 Gene
chr5:134,429,051-134,435,047
(GRCh38/hg38)
Size:
5,997 bases
Orientation:
Minus strand
chr5:133,764,742-133,796,306
(GRCh37/hg19)
Size:
31,565 bases
Orientation:
Minus strand

Genomic View for LOC102546229 Gene

Genes around LOC102546229 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102546229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102546229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102546229 Gene

Proteins for LOC102546229 Gene

Post-translational modifications for LOC102546229 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102546229 Gene

Domains & Families for LOC102546229 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102546229 Gene

Function for LOC102546229 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102546229 Gene

Localization for LOC102546229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102546229 Gene

Pathways & Interactions for LOC102546229 Gene

PathCards logo

SuperPathways for LOC102546229 Gene

No Data Available

Interacting Proteins for LOC102546229 Gene

Gene Ontology (GO) - Biological Process for LOC102546229 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102546229 Gene

Drugs & Compounds for LOC102546229 Gene

No Compound Related Data Available

Transcripts for LOC102546229 Gene

mRNA/cDNA for LOC102546229 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102546229 Gene

No ASD Table

Relevant External Links for LOC102546229 Gene

GeneLoc Exon Structure for
LOC102546229

Expression for LOC102546229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102546229 Gene

mRNA differential expression in normal tissues according to GTEx for LOC102546229 Gene

This gene is overexpressed in Liver (x7.6), Brain - Putamen (basal ganglia) (x6.7), Brain - Caudate (basal ganglia) (x6.0), and Brain - Nucleus accumbens (basal ganglia) (x4.6).
genes like me logo Genes that share expression patterns with LOC102546229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102546229 Gene

Orthologs for LOC102546229 Gene

No data available for Orthologs and Evolution for LOC102546229 Gene

Paralogs for LOC102546229 Gene

No data available for Paralogs for LOC102546229 Gene

Variants for LOC102546229 Gene

Sequence variations from dbSNP and Humsavar for LOC102546229 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000438814 -- 134,429,447(-) G/C non_coding_transcript_variant
rs1000439292 -- 134,431,348(-) G/A intron_variant
rs1000794762 -- 134,429,272(-) G/A non_coding_transcript_variant
rs1000858971 -- 134,431,025(-) C/T intron_variant
rs1000917230 -- 134,436,225(-) A/C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102546229 Gene

Variant ID Type Subtype PubMed ID
esv3606847 CNV loss 21293372
nsv509087 CNV insertion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102546229 Gene

Disorders for LOC102546229 Gene

No disorders were found for LOC102546229 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102546229 Gene

Publications for LOC102546229 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

No data available for External Links for LOC102546229 Gene

Products for LOC102546229 Gene

Sources for LOC102546229 Gene

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