Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102503427 Gene

Subcategory (RNA class) for LOC102503427 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102503427 Gene

  • Uncharacterized LOC102503427 3

External Ids for LOC102503427 Gene

Previous GeneCards Identifiers for LOC102503427 Gene

  • GC05U902014

Summaries for LOC102503427 Gene

GeneCards Summary for LOC102503427 Gene

LOC102503427 (Uncharacterized LOC102503427) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102503427 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102503427 Gene

Genomics for LOC102503427 Gene

GeneHancer (GH) Regulatory Elements for LOC102503427 Gene

Promoters and enhancers for LOC102503427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J072555 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 600.7 +0.1 144 3.2 AHR ZIC2 REST CTCF POLR2A SP1 EED RNF2 RUNX3 TFDP1 LOC102503427 TNPO1 ENSG00000249085 ZNF366 MAP1B GC05P072582
GH05J072559 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.7 +3.1 3068 1.1 ZNF639 SMARCA4 PKNOX1 SOX6 MGA EED CTBP1 HDAC2 E2F5 FOSL1 LOC102503427 GC05P072582
GH05J072551 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -4.7 -4676 1.2 ZKSCAN8 FOS FOSL1 DPF2 JUND JUN ZBTB33 ZNF366 FCHO2 LOC102503427
GH05J072561 Enhancer 0.8 ENCODE 0.7 +4.6 4613 0.9 CBFA2T2 NCOA6 TRIM24 SMARCA4 MTA1 GMEB1 DPF2 IKZF1 ATF1 PKNOX1 LOC102503427 GC05P072582
GH05J072517 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -38.5 -38476 6.4 TCF7 ZNF766 ZNF157 RUNX3 FOXA2 FOXA1 EGR2 L3MBTL2 MAP1B FCHO2 ZNF366 LOC102503427
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102503427 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102503427 Gene

Genomic Locations for LOC102503427 Gene
chr5:72,557,077-72,571,743
(GRCh38/hg38)
Size:
14,667 bases
Orientation:
Plus strand

Genomic View for LOC102503427 Gene

Genes around LOC102503427 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102503427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102503427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102503427 Gene

Proteins for LOC102503427 Gene

Post-translational modifications for LOC102503427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102503427 Gene

Domains & Families for LOC102503427 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102503427 Gene

Function for LOC102503427 Gene

Phenotypes From GWAS Catalog for LOC102503427 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102503427 Gene

Localization for LOC102503427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102503427 Gene

Pathways & Interactions for LOC102503427 Gene

PathCards logo

SuperPathways for LOC102503427 Gene

No Data Available

Interacting Proteins for LOC102503427 Gene

Gene Ontology (GO) - Biological Process for LOC102503427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102503427 Gene

Drugs & Compounds for LOC102503427 Gene

No Compound Related Data Available

Transcripts for LOC102503427 Gene

mRNA/cDNA for LOC102503427 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102503427 Gene

No ASD Table

Relevant External Links for LOC102503427 Gene

GeneLoc Exon Structure for
LOC102503427

Expression for LOC102503427 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102503427 Gene

Orthologs for LOC102503427 Gene

No data available for Orthologs and Evolution for LOC102503427 Gene

Paralogs for LOC102503427 Gene

No data available for Paralogs for LOC102503427 Gene

Variants for LOC102503427 Gene

Sequence variations from dbSNP and Humsavar for LOC102503427 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000461150 -- 72,567,872(+) T/C intron_variant
rs1000492064 -- 72,568,099(+) A/G/T intron_variant
rs1000722679 -- 72,560,982(+) T/A intron_variant
rs1001099987 -- 72,568,108(+) A/T intron_variant
rs1001281283 -- 72,561,120(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102503427 Gene

Disorders for LOC102503427 Gene

No disorders were found for LOC102503427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102503427 Gene

Publications for LOC102503427 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

No data available for External Links for LOC102503427 Gene

Products for LOC102503427 Gene

Sources for LOC102503427 Gene

Content
Loading form....