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Aliases for LOC102467226 Gene

Subcategory (RNA class) for LOC102467226 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102467226 Gene

  • Uncharacterized LOC102467226 3
  • CTC-546K23.1 3

External Ids for LOC102467226 Gene

Previous GeneCards Identifiers for LOC102467226 Gene

  • GC05P120536
  • GC05P121199

Summaries for LOC102467226 Gene

GeneCards Summary for LOC102467226 Gene

LOC102467226 (Uncharacterized LOC102467226) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102467226 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102467226 Gene

Genomics for LOC102467226 Gene

GeneHancer (GH) Regulatory Elements for LOC102467226 Gene

Promoters and enhancers for LOC102467226 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J121273 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -48.3 -48317 1.1 MAFK SMARCA4 FOSL2 CREB1 NFE2L2 REST SMARCC1 ZNF316 JUN SP1 LOC102467226 ENSG00000229855 GC05P121146
GH05J121350 Enhancer 0.4 Ensembl 0.3 +28.2 28151 1 MAFK FOSL2 JUND ENSG00000279860 LOC102467226 ENSG00000229855 GC05P121146
GH05J121326 Enhancer 0.2 Ensembl 0.7 +3.6 3551 0.2 LOC102467226 ENSG00000279860 ENSG00000229855 GC05P121146
GH05J121251 Enhancer 0.5 ENCODE 0.2 -70.4 -70363 1.2 REST SP1 ATF3 FOXA2 FOSL2 JUN JUND ENSG00000229855 LOC102467226 GC05P121146
GH05J121296 Enhancer 0.2 Ensembl 0.3 -26.0 -26049 0.2 LOC102467226 ENSG00000229855 GC05P121146
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102467226 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102467226 Gene

Genomic Locations for LOC102467226 Gene
chr5:121,322,550-121,325,837
(GRCh38/hg38)
Size:
3,288 bases
Orientation:
Plus strand
chr5:120,535,399-120,693,093
(GRCh37/hg19)
Size:
157,695 bases
Orientation:
Plus strand

Genomic View for LOC102467226 Gene

Genes around LOC102467226 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102467226 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102467226 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102467226 Gene

Proteins for LOC102467226 Gene

Post-translational modifications for LOC102467226 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102467226 Gene

Domains & Families for LOC102467226 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102467226 Gene

Function for LOC102467226 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102467226 Gene

Localization for LOC102467226 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102467226 Gene

Pathways & Interactions for LOC102467226 Gene

PathCards logo

SuperPathways for LOC102467226 Gene

No Data Available

Interacting Proteins for LOC102467226 Gene

Gene Ontology (GO) - Biological Process for LOC102467226 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102467226 Gene

Drugs & Compounds for LOC102467226 Gene

No Compound Related Data Available

Transcripts for LOC102467226 Gene

mRNA/cDNA for LOC102467226 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102467226 Gene

No ASD Table

Relevant External Links for LOC102467226 Gene

GeneLoc Exon Structure for
LOC102467226

Expression for LOC102467226 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102467226 Gene

mRNA differential expression in normal tissues according to GTEx for LOC102467226 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x10.6), Brain - Amygdala (x8.5), Testis (x7.7), and Brain - Hypothalamus (x5.5).
genes like me logo Genes that share expression patterns with LOC102467226: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102467226 Gene

Orthologs for LOC102467226 Gene

No data available for Orthologs and Evolution for LOC102467226 Gene

Paralogs for LOC102467226 Gene

No data available for Paralogs for LOC102467226 Gene

Variants for LOC102467226 Gene

Sequence variations from dbSNP and Humsavar for LOC102467226 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000843859 -- 121,322,795(+) A/C intron_variant
rs1001276355 -- 121,323,001(+) G/A intron_variant
rs1001711123 -- 121,322,083(+) A/G upstream_transcript_variant
rs1002078584 -- 121,323,374(+) A/G intron_variant
rs1002608851 -- 121,324,667(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102467226 Gene

Variant ID Type Subtype PubMed ID
esv2763911 CNV loss 21179565
esv33642 CNV gain 17666407
nsv1020270 CNV loss 25217958
nsv1022981 CNV loss 25217958
nsv4976 CNV insertion 18451855
nsv518883 CNV loss 19592680
nsv599606 CNV loss 21841781
nsv599617 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102467226 Gene

Disorders for LOC102467226 Gene

No disorders were found for LOC102467226 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102467226 Gene

Publications for LOC102467226 Gene

No publications were found for LOC102467226 Gene.

No data available for External Links for LOC102467226 Gene

Products for LOC102467226 Gene

Sources for LOC102467226 Gene

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