LOC102467222 Gene (RNA Gene)

Uncharacterized LOC102467222

GC08P020952
GIFtS:
6
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Aliases for LOC102467222 Gene

Data sources for LOC102467222 Gene:

Subcategory (RNA class) for LOC102467222 Gene

lncRNA

Aliases for LOC102467222 Gene

External Ids for LOC102467222 Gene

Previous GeneCards Identifiers for LOC102467222 Gene

  • GC08U901872
  • GC08P020955

Summaries for LOC102467222 Gene

GeneCards Summary for LOC102467222 Gene

LOC102467222 (Uncharacterized LOC102467222) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102467222 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102467222 Gene

Genomics for LOC102467222 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC102467222 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J020951 Enhancer 0.7 Ensembl 250.7 -0.7 -712 0.4 IKZF1 HES1 ZNF395 VEZF1 GABPA TAL1 FOSL1 ZNF318 ZNF589 NCOA1 LOC102467222 piR-38351-448 ENSG00000254092 LZTS1 GFRA2
GH08J020952 Enhancer 0.5 Ensembl 250.7 +1.5 1488 2 JUND ATF2 CREB1 ATF7 CEBPB ENSG00000254026 LOC105379316 LOC102467222 ENSG00000254092 LZTS1 GFRA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102467222 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102467222 Gene

Latest Assembly
chr8:20,952,513-20,969,319
(GRCh38/hg38)
Size:
16,807 bases
Orientation:
Plus strand

Previous Assembly
chr8:20,811,144-20,826,449
(GRCh37/hg19 by Entrez Gene)
Size:
15,306 bases
Orientation:
Plus strand

chr8:20,810,638-20,826,415
(GRCh37/hg19 by Ensembl)
Size:
15,778 bases
Orientation:
Plus strand

Genomic View for LOC102467222 Gene

Genes around LOC102467222 on UCSC Golden Path with GeneCards custom track
LOC102467222 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC102467222 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102467222 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC102467222 Gene

Proteins for LOC102467222 Gene

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Post-translational modifications for LOC102467222 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102467222 Gene

Domains & Families for LOC102467222 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102467222 Gene

Function for LOC102467222 Gene

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  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102467222 Gene

Localization for LOC102467222 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102467222 Gene

Pathways & Interactions for LOC102467222 Gene

PathCards logo

SuperPathways for LOC102467222 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102467222 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102467222 Gene

Drugs & Compounds for LOC102467222 Gene

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No Compound Related Data Available

Transcripts for LOC102467222 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102467222 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E2A1F_9606 lncRNA 874 4

Ensembl: ENST00000523852 (view in UCSC) ,

LncBook: HSALNT0133904,

LNCipedia: LINC02153:21,

NONCODE: NONHSAT125410.2,

URS0000812176_9606 lncRNA 816 4

RefSeq: NR_130773,

LncBook: HSALNT0133913,

LNCipedia: LINC02153:7,

NONCODE: NONHSAT215520.1,

URS00005EA3B0_9606 lncRNA 676 3

Ensembl: ENST00000523035 (view in UCSC) ,

LNCipedia: LINC02153:24,

NONCODE: NONHSAT125413.2,

URS00008120F2_9606 lncRNA 719 2

RefSeq: NR_130774,

LNCipedia: LINC02153:6,

URS00008B4DC4_9606 lncRNA 3298 3

LncBook: HSALNT0133899,

LNCipedia: LINC02153:20,

NONCODE: NONHSAT125407.2,

LOC102467222 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102467222 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102467222 Gene

No ASD Table

Relevant External Links for LOC102467222 Gene

GeneLoc Exon Structure for
LOC102467222

Expression for LOC102467222 Gene

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Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102467222

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102467222 Gene

Orthologs for LOC102467222 Gene

Evolution for LOC102467222 Gene

ENSEMBL:
Gene Tree for LOC102467222 (if available)
TreeFam:
Gene Tree for LOC102467222 (if available)

No data available for Orthologs for LOC102467222 Gene

Paralogs for LOC102467222 Gene

No data available for Paralogs for LOC102467222 Gene

Variants for LOC102467222 Gene

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dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC102467222 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102467222 Gene

Disorders for LOC102467222 Gene

Additional Disease Information for LOC102467222

Open Targets Platform
Open Targets Platform

No disorders were found for LOC102467222 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102467222 Gene

Publications for LOC102467222 Gene

No publications were found for LOC102467222 Gene.

No data available for Mastermind for LOC102467222 Gene

Products for LOC102467222 Gene

Sources for LOC102467222 Gene