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Aliases for LOC102467216 Gene

Subcategory (RNA class) for LOC102467216 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102467216 Gene

  • Uncharacterized LOC102467216 3

External Ids for LOC102467216 Gene

Previous GeneCards Identifiers for LOC102467216 Gene

  • GC05U901928

Summaries for LOC102467216 Gene

GeneCards Summary for LOC102467216 Gene

LOC102467216 (Uncharacterized LOC102467216) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102467216 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102467216 Gene

Genomics for LOC102467216 Gene

GeneHancer (GH) Regulatory Elements for LOC102467216 Gene

Promoters and enhancers for LOC102467216 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J112681 Enhancer 0.5 Ensembl 600.7 +1.2 1179 0.6 CREB1 DPF2 BATF JUND LOC102467216 LINC02200
GH05J112682 Enhancer 0.4 Ensembl 600.7 +0.4 387 0.2 TCF12 DPF2 LOC102467216 LINC02200
GH05J112683 Enhancer 1 FANTOM5 Ensembl ENCODE 0.7 -2.6 -2612 3.4 IKZF1 IKZF2 PKNOX1 BMI1 POLR2A EBF1 JUND ZRSR2P1 REEP5 DCP2 LOC102467216 APC
GH05J112694 Enhancer 1.1 Ensembl ENCODE 0.4 -12.4 -12413 1 CBFA2T2 MLLT1 GTF2F1 CDC5L BACH1 TRIM24 EGR1 SMARCA4 MTA1 DPF2 EPB41L4A REEP5 APC LOC102467216
GH05J112627 Promoter/Enhancer 1.5 Ensembl ENCODE 0.2 +50.1 50064 9.7 MAFK SP7 SP1 PRDM1 ZNF680 CREB1 RXRA PRDM10 RFX1 POLR2A EPB41L4A LINC02200 LOC102467216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102467216 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102467216 Gene

Genomic Locations for LOC102467216 Gene
chr5:112,656,428-112,682,888
(GRCh38/hg38)
Size:
26,461 bases
Orientation:
Minus strand

Genomic View for LOC102467216 Gene

Genes around LOC102467216 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102467216 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102467216 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102467216 Gene

Proteins for LOC102467216 Gene

Post-translational modifications for LOC102467216 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102467216 Gene

Domains & Families for LOC102467216 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102467216 Gene

Function for LOC102467216 Gene

Phenotypes From GWAS Catalog for LOC102467216 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102467216 Gene

Localization for LOC102467216 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102467216 Gene

Pathways & Interactions for LOC102467216 Gene

PathCards logo

SuperPathways for LOC102467216 Gene

No Data Available

Interacting Proteins for LOC102467216 Gene

Gene Ontology (GO) - Biological Process for LOC102467216 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102467216 Gene

Drugs & Compounds for LOC102467216 Gene

No Compound Related Data Available

Transcripts for LOC102467216 Gene

mRNA/cDNA for LOC102467216 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102467216 Gene

No ASD Table

Relevant External Links for LOC102467216 Gene

GeneLoc Exon Structure for
LOC102467216

Expression for LOC102467216 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102467216 Gene

Orthologs for LOC102467216 Gene

No data available for Orthologs and Evolution for LOC102467216 Gene

Paralogs for LOC102467216 Gene

No data available for Paralogs for LOC102467216 Gene

Variants for LOC102467216 Gene

Sequence variations from dbSNP and Humsavar for LOC102467216 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000108734 -- 112,672,647(-) T/G intron_variant
rs1000185068 -- 112,657,593(-) T/C intron_variant
rs1000202424 -- 112,660,370(-) T/C intron_variant
rs1000328352 -- 112,662,549(-) A/G intron_variant
rs1000351903 -- 112,667,883(-) C/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102467216 Gene

Variant ID Type Subtype PubMed ID
esv3606299 CNV loss 21293372
nsv599368 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102467216 Gene

Disorders for LOC102467216 Gene

No disorders were found for LOC102467216 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102467216 Gene

Publications for LOC102467216 Gene

No publications were found for LOC102467216 Gene.

No data available for External Links for LOC102467216 Gene

Products for LOC102467216 Gene

Sources for LOC102467216 Gene

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