Aliases for LOC101930370 Gene

Data sources for LOC101930370 Gene:

Subcategory (RNA class) for LOC101930370 Gene

lncRNA

Aliases for LOC101930370 Gene

External Ids for LOC101930370 Gene

Previous GeneCards Identifiers for LOC101930370 Gene

  • GC04U901612
  • GC04M173131
  • GC04M173094
  • GC04M173124

Summaries for LOC101930370 Gene

GeneCards Summary for LOC101930370 Gene

LOC101930370 (Uncharacterized LOC101930370) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101930370 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101930370 Gene

Genomics for LOC101930370 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101930370 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J173167 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 258.3 +0.1 79 5.2 TBP FEZF1 NR2C1 MNT IKZF1 ZFP64 POLR2A ELF1 CTCF ZIC2 LOC101930370 GALNT7 HMGB2
GH04J173208 Enhancer 1.2 Ensembl ENCODE dbSUPER 8.9 -41.1 -41135 5.6 ZNF217 MNT IKZF1 BHLHE40 ELF1 REST MBD2 MAX EP300 TAL1 HSALNG0038579 LOC101930370 GALNT7 lnc-HMGB2-8 HMGB2
GH04J173217 Enhancer 1.2 Ensembl ENCODE dbSUPER 8.4 -49.0 -49045 3 FEZF1 IKZF1 MBD2 ZEB1 ZIC2 ARNT NBN TAL1 ZNF843 ZFP91 LOC101930370 GALNT7 HSALNG0038579 lnc-HMGB2-8 HMGB2
GH04J173281 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 6.2 -112.3 -112346 1.6 MNT IKZF1 REST TRIM25 ZEB2 TAL1 NKRF PRDM10 CTCF SPI1 LOC101930370 HSALNG0038582 MIR548T HMGB2 GALNT7
GH04J173173 Enhancer 1 ENCODE dbSUPER 8.3 -5.0 -5036 2 CEBPB VEZF1 ZEB2 TAL1 ZNF316 SPI1 MLLT1 HDAC2 STAT5A TCF12 LOC101930370 GALNT7 piR-45471-472 HMGB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101930370 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101930370 Gene

Latest Assembly
chr4:173,090,462-173,169,680
(GRCh38/hg38)
Size:
79,219 bases
Orientation:
Minus strand

Previous Assembly
chr4:174,053,084-174,090,803
(GRCh37/hg19 by Entrez Gene)
Size:
37,720 bases
Orientation:
Minus strand

chr4:174,053,079-174,090,803
(GRCh37/hg19 by Ensembl)
Size:
37,725 bases
Orientation:
Minus strand

Genomic View for LOC101930370 Gene

Genes around LOC101930370 on UCSC Golden Path with GeneCards custom track
LOC101930370 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101930370 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101930370 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101930370 Gene

Proteins for LOC101930370 Gene

Post-translational modifications for LOC101930370 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101930370 Gene

Domains & Families for LOC101930370 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101930370 Gene

Function for LOC101930370 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101930370 Gene

Localization for LOC101930370 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101930370 Gene

Pathways & Interactions for LOC101930370 Gene

PathCards logo

SuperPathways for LOC101930370 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101930370 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101930370 Gene

Drugs & Compounds for LOC101930370 Gene

No Compound Related Data Available

Transcripts for LOC101930370 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101930370 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000466ED1_9606 lncRNA 2036 3

Ensembl: ENST00000500914 (view in UCSC) ,

LNCipedia: lnc-HMGB2-3:1,

NONCODE: NONHSAT099216.2,

URS0000A76DCD_9606 lncRNA 2038 2

RefSeq: NR_134242,

LNCipedia: lnc-HMGB2-3:22,

URS0000EF0F68_9606 lncRNA 2617 1

Ensembl: ENST00000661589 (view in UCSC) ,

URS0000EF154A_9606 lncRNA 2585 1

Ensembl: ENST00000499322 (view in UCSC) ,

URS0000EF6A49_9606 lncRNA 2337 1

Ensembl: ENST00000510523 (view in UCSC) ,

LOC101930370 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101930370 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101930370 Gene

No ASD Table

Relevant External Links for LOC101930370 Gene

GeneLoc Exon Structure for
LOC101930370

Expression for LOC101930370 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101930370 Gene

genes like me logo Genes that share expression patterns with LOC101930370: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101930370 Gene

Orthologs for LOC101930370 Gene

Evolution for LOC101930370 Gene

ENSEMBL:
Gene Tree for LOC101930370 (if available)
TreeFam:
Gene Tree for LOC101930370 (if available)

No data available for Orthologs for LOC101930370 Gene

Paralogs for LOC101930370 Gene

No data available for Paralogs for LOC101930370 Gene

Variants for LOC101930370 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101930370 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101930370 Gene

Disorders for LOC101930370 Gene

Additional Disease Information for LOC101930370

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101930370 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101930370 Gene

Publications for LOC101930370 Gene

  1. LOC101930370/MiR-1471 Axis Modulates the Hedgehog Signaling Pathway in Breast Cancer. (PMID: 30041193) Liu X … Zhang Y (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3

No data available for Mastermind for LOC101930370 Gene

Products for LOC101930370 Gene

Sources for LOC101930370 Gene