Aliases for LOC101929935 Gene

Data sources for LOC101929935 Gene:

RNA type for LOC101929935 Gene

lncRNA

Aliases for LOC101929935 Gene

External Ids for LOC101929935 Gene

Previous GeneCards Identifiers for LOC101929935 Gene

  • GC01U903783
  • GC01M056627

Summaries for LOC101929935 Gene

GeneCards Summary for LOC101929935 Gene

LOC101929935 (Uncharacterized LOC101929935) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929935 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929935 Gene

Genomics for LOC101929935 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929935 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056644 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.4 -388 3.4 ZNF600 CEBPA ZSCAN16 ZIC2 ZBTB10 ZNF341 THAP11 SAP130 RARA YY1 LOC101929935 PLPP3 PRKAA2 RF00017-201 piR-39858-023 FYB2
GH01J056572 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +68.1 68088 10.3 ZNF654 ZNF600 ZNF580 ZMYM3 CEBPA ZSCAN16 POLR2A ZIC2 ZBTB10 CHD4 PLPP3 C8A FYB2 C8B RPSAP20 PRKAA2 lnc-FYB2-4 RPL23AP85 lnc-PRKAA2-9 ENSG00000284686
GH01J056640 Enhancer 0.7 Ensembl 0.4 +5.8 5817 0.2 FOXA1 FEZF1 FOXA2 SAP130 RARA CREM FOXP1 PRDM6 BCL6 SOX5 LOC101929935 PLPP3 RF00017-201 hsa-miR-5095-020 ENSG00000284686
GH01J056627 Enhancer 0.8 Ensembl ENCODE 0.4 +18.3 18259 2.5 CEBPA CEBPB FOXA2 ZNF146 FOXP1 FOXA1 NFYC ZNF3 ZFP36 TRIM28 RF00017-201 piR-57387-001 PLPP3 LOC101929935 ENSG00000284686
GH01J056666 Enhancer 0.5 Ensembl 0.4 -21.1 -21083 0.4 SP7 CTCF RAD21 OSR2 MZF1 USF1 piR-39858-023 LOC101929935 PRKAA2 RF00017-201 FYB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929935 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929935 Gene

Latest Assembly
chr1:56,579,167-56,645,318
(GRCh38/hg38)
Size:
66,152 bases
Orientation:
Minus strand

Previous Assembly
chr1:57,093,464-57,110,991
(GRCh37/hg19 by Entrez Gene)
Size:
17,528 bases
Orientation:
Minus strand

Genomic View for LOC101929935 Gene

Genes around LOC101929935 on UCSC Golden Path with GeneCards custom track
LOC101929935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929935 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929935 Gene

Proteins for LOC101929935 Gene

Post-translational modifications for LOC101929935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929935 Gene

Domains & Families for LOC101929935 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929935 Gene

Function for LOC101929935 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929935 Gene

Localization for LOC101929935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929935 Gene

Pathways & Interactions for LOC101929935 Gene

PathCards logo

SuperPathways for LOC101929935 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929935 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929935 Gene

Drugs & Compounds for LOC101929935 Gene

No Compound Related Data Available

Transcripts for LOC101929935 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929935 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A77293_9606 lncRNA 490 3

RefSeq: NR_135111,

LncBook: HSALNT0007306,

LNCipedia: lnc-PLPP3-2:1,

URS00008B2160_9606 lncRNA 446 3

LncBook: HSALNT0007305,

LNCipedia: lnc-PLPP3-2:6,

NONCODE: NONHSAT003456.2,

URS00008BF15D_9606 lncRNA 475 2

LNCipedia: lnc-PLPP3-2:2,

NONCODE: NONHSAT003457.2,

URS00008BA599_9606 lncRNA 814 1

LNCipedia: lnc-PLPP3-2:5,

URS00008BC333_9606 lncRNA 597 1

LNCipedia: lnc-PLPP3-2:3,

LOC101929935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929935 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929935 Gene

No ASD Table

Relevant External Links for LOC101929935 Gene

GeneLoc Exon Structure for
LOC101929935

Expression for LOC101929935 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929935 Gene

Orthologs for LOC101929935 Gene

No data available for Orthologs and Evolution for LOC101929935 Gene

Paralogs for LOC101929935 Gene

No data available for Paralogs for LOC101929935 Gene

Variants for LOC101929935 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929935 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929935 Gene

Disorders for LOC101929935 Gene

No disorders were found for LOC101929935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929935 Gene

Publications for LOC101929935 Gene

No publications were found for LOC101929935 Gene.

No data available for Mastermind for LOC101929935 Gene

Products for LOC101929935 Gene

Sources for LOC101929935 Gene