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Aliases for LOC101929897 Gene

Subcategory (RNA class) for LOC101929897 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929897 Gene

  • Uncharacterized LOC101929897 3

External Ids for LOC101929897 Gene

Previous GeneCards Identifiers for LOC101929897 Gene

  • GC08U901686
  • GC08M042233

Summaries for LOC101929897 Gene

GeneCards Summary for LOC101929897 Gene

LOC101929897 (Uncharacterized LOC101929897) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929897 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929897 Gene

Genomics for LOC101929897 Gene

GeneHancer (GH) Regulatory Elements for LOC101929897 Gene

Promoters and enhancers for LOC101929897 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042269 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.1 -146 3 SP1 ZFX ELF3 CBFA2T2 ZNF148 NKRF POLR2A ZNF687 ZBTB7A ELF1 IKBKB ENSG00000253408 LOC101929897 POLB KAT6A ENSG00000254165
GH08J042268 Enhancer 0.4 ENCODE 600.7 +2.0 1999 0.7 PRDM1 BCL11B LOC101929897 POLB AP3M2 ENSG00000253408 PLAT
GH08J042264 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.7 +4.6 4576 3.7 ZKSCAN8 CBFA2T2 ZNF148 ZNF384 ZNF687 BACH1 YY1 RELA SP7 PRDM1 ENSG00000254165 IKBKB POLB HGSNAT KAT6A HOOK3 ENSG00000254198 LOC101929897 ENSG00000253408 PLAT
GH08J042255 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +13.2 13161 5.6 MAFK ZNF316 RUNX3 FOS NR2F1 JUNB CEBPG CEBPB JUN ZBTB33 POLB PLAT DKK4 LOC101929897 ENSG00000253408
GH08J042214 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.2 +56.0 55951 1.6 CC2D1A CBFA2T2 ZNF148 ZNF121 TRIM24 PRDM1 ZNF639 SMARCA4 MTA1 GMEB1 AP3M2 PLAT LOC101929897
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929897 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929897 Gene

Genomic Locations for LOC101929897 Gene
chr8:42,255,320-42,270,961
(GRCh38/hg38)
Size:
15,642 bases
Orientation:
Minus strand

Genomic View for LOC101929897 Gene

Genes around LOC101929897 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929897 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929897 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929897 Gene

Proteins for LOC101929897 Gene

Post-translational modifications for LOC101929897 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929897 Gene

Domains & Families for LOC101929897 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929897 Gene

Function for LOC101929897 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929897 Gene

Localization for LOC101929897 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929897 Gene

Pathways & Interactions for LOC101929897 Gene

PathCards logo

SuperPathways for LOC101929897 Gene

No Data Available

Interacting Proteins for LOC101929897 Gene

Gene Ontology (GO) - Biological Process for LOC101929897 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929897 Gene

Drugs & Compounds for LOC101929897 Gene

No Compound Related Data Available

Transcripts for LOC101929897 Gene

mRNA/cDNA for LOC101929897 Gene

(4) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929897 Gene

No ASD Table

Relevant External Links for LOC101929897 Gene

GeneLoc Exon Structure for
LOC101929897

Expression for LOC101929897 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929897 Gene

Orthologs for LOC101929897 Gene

No data available for Orthologs and Evolution for LOC101929897 Gene

Paralogs for LOC101929897 Gene

No data available for Paralogs for LOC101929897 Gene

Variants for LOC101929897 Gene

Sequence variations from dbSNP and Humsavar for LOC101929897 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000201138 -- 42,266,499(-) A/C intron_variant
rs1000401512 -- 42,260,492(-) C/T intron_variant
rs1000588352 -- 42,271,207(-) G/A upstream_transcript_variant
rs1000684550 -- 42,258,861(-) C/T intron_variant
rs1000796496 -- 42,264,923(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929897 Gene

Variant ID Type Subtype PubMed ID
esv3617006 CNV loss 21293372
nsv508508 CNV deletion 20534489
nsv831301 CNV loss 17160897
nsv971300 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929897 Gene

Disorders for LOC101929897 Gene

No disorders were found for LOC101929897 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929897 Gene

Publications for LOC101929897 Gene

No publications were found for LOC101929897 Gene.

No data available for External Links for LOC101929897 Gene

Products for LOC101929897 Gene

Sources for LOC101929897 Gene

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