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Aliases for LOC101929574 Gene

Subcategory (RNA class) for LOC101929574 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929574 Gene

  • Uncharacterized LOC101929574 3
  • Novel Transcript 5
  • AC021028.1 5

External Ids for LOC101929574 Gene

Previous GeneCards Identifiers for LOC101929574 Gene

  • GC10U901644

Summaries for LOC101929574 Gene

GeneCards Summary for LOC101929574 Gene

LOC101929574 (Uncharacterized LOC101929574) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929574 Gene

Genomics for LOC101929574 Gene

GeneHancer (GH) Regulatory Elements for LOC101929574 Gene

Promoters and enhancers for LOC101929574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J080535 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 621.2 -0.1 -71 1.6 ZFX NKRF GTF2F1 ZNF687 ELF1 POLR2A SP1 MLLT1 RAD21 IKZF1 LOC101929574 SH2D4B TSPAN14
GH10J080537 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.5 -1518 0.2 CBFA2T2 IKZF1 NCOR1 RCOR1 TCF12 TAL1 CBFA2T3 LOC101929574 SH2D4B
GH10J080538 Enhancer 0.4 ENCODE dbSUPER 600.7 -1.2 -1158 0.2 SH2D4B LOC101929574
GH10J080453 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.6 +71.6 71585 22.7 SP1 ZFX ZKSCAN8 ZNF148 NKRF MLLT1 ZNF121 GTF2F1 ZNF687 NFIB TSPAN14 PRXL2A LOC101929574 DYDC1 DYDC2 ANXA11 PLAC9 MBL1P SH2D4B PIR41876
GH10J080522 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +7.9 7942 11.2 CTCF RELA RAD21 IKZF1 PRDM10 IKZF2 ZIC2 ZNF24 SP1 CTBP1 LOC101929574 SH2D4B ANXA11 TSPAN14 PIR63069 PIR41876
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929574 Gene

Genomic Locations for LOC101929574 Gene
chr10:80,529,597-80,535,942
(GRCh38/hg38)
Size:
6,346 bases
Orientation:
Minus strand
chr10:82,289,353-82,295,698
(GRCh37/hg19)
Size:
6,346 bases
Orientation:
Minus strand

Genomic View for LOC101929574 Gene

Genes around LOC101929574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929574 Gene

Proteins for LOC101929574 Gene

Post-translational modifications for LOC101929574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929574 Gene

Domains & Families for LOC101929574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929574 Gene

Function for LOC101929574 Gene

Phenotypes From GWAS Catalog for LOC101929574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929574 Gene

Localization for LOC101929574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929574 Gene

Pathways & Interactions for LOC101929574 Gene

PathCards logo

SuperPathways for LOC101929574 Gene

No Data Available

Interacting Proteins for LOC101929574 Gene

Gene Ontology (GO) - Biological Process for LOC101929574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929574 Gene

Drugs & Compounds for LOC101929574 Gene

No Compound Related Data Available

Transcripts for LOC101929574 Gene

mRNA/cDNA for LOC101929574 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929574 Gene

No ASD Table

Relevant External Links for LOC101929574 Gene

GeneLoc Exon Structure for
LOC101929574

Expression for LOC101929574 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929574 Gene

Orthologs for LOC101929574 Gene

Evolution for LOC101929574 Gene

ENSEMBL:
Gene Tree for LOC101929574 (if available)
TreeFam:
Gene Tree for LOC101929574 (if available)

No data available for Orthologs for LOC101929574 Gene

Paralogs for LOC101929574 Gene

No data available for Paralogs for LOC101929574 Gene

Variants for LOC101929574 Gene

Sequence variations from dbSNP and Humsavar for LOC101929574 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000535594 -- 80,531,580(-) G/A intron_variant
rs1000653154 -- 80,533,035(-) C/T intron_variant
rs1001188629 -- 80,536,726(-) C/T upstream_transcript_variant
rs1001326586 -- 80,529,194(-) T/C downstream_transcript_variant
rs1003654275 -- 80,530,453(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929574 Gene

Variant ID Type Subtype PubMed ID
nsv1141879 OTHER inversion 24896259
nsv469837 CNV loss 16826518
nsv470967 CNV loss 18288195
nsv7354 CNV deletion 18451855
nsv831924 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929574 Gene

Disorders for LOC101929574 Gene

No disorders were found for LOC101929574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929574 Gene

Publications for LOC101929574 Gene

No publications were found for LOC101929574 Gene.

No data available for External Links for LOC101929574 Gene

Products for LOC101929574 Gene

Sources for LOC101929574 Gene

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