Aliases for LOC101929574 Gene

Subcategory (RNA class) for LOC101929574 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101929574 Gene

  • Uncharacterized LOC101929574 3
  • Novel Transcript 5
  • NONHSAG006371.2 91
  • HSALNG0079218 164
  • Lnc-DYDC1-1 165
  • AC021028.1 5

External Ids for LOC101929574 Gene

Previous GeneCards Identifiers for LOC101929574 Gene

  • GC10U901644
  • GC10M080528

Summaries for LOC101929574 Gene

GeneCards Summary for LOC101929574 Gene

LOC101929574 (Uncharacterized LOC101929574) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929574 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929574 Gene

Genomics for LOC101929574 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J080535 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 621.2 -0.1 -101 1.4 CTCF BACH1 ZNF143 PKNOX1 REST SMAD5 RAD21 IKZF2 POLR2A SP1 LOC101929574 SH2D4B piR-31162-042 piR-49732-045 piR-41394-005 piR-56759-060 TSPAN14
GH10J080537 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.4 -1448 0.2 IKZF1 NCOR1 RCOR1 TAL1 TCF12 CBFA2T2 GATA2 CBFA2T3 LOC101929574 SH2D4B piR-56759-060 TSPAN14
GH10J080538 Enhancer 0.3 ENCODE dbSUPER 600.7 -1.1 -1088 0.2 LOC101929574 SH2D4B piR-49732-045 piR-56759-060 TSPAN14
GH10J080452 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.6 +71.8 71767 22.9 HNRNPL GATAD2A CTCF ZBTB33 PRDM10 LEF1 SOX13 IKZF1 BACH1 JUND TSPAN14 PRXL2A LOC101929574 DYDC1 DYDC2 ANXA11 PLAC9 MBL1P SH2D4B RF00017-717
GH10J080492 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.9 +35.7 35681 15 RNF2 CEBPG HNRNPL CREB1 GATAD2A CTCF TFE3 ZNF512 RFX1 LEF1 TSPAN14 NUTM2B-AS1 ENSG00000272489 PRXL2A DYDC1 DYDC2 LOC101929574 ANXA11 piR-48877 MN309174-057
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929574 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929574 Gene

Genomic Locations for LOC101929574 Gene
chr10:80,519,577-80,536,012
(GRCh38/hg38)
Size:
16,436 bases
Orientation:
Minus strand
chr10:82,289,353-82,295,698
(GRCh37/hg19)
Size:
6,346 bases
Orientation:
Minus strand

Genomic View for LOC101929574 Gene

Genes around LOC101929574 on UCSC Golden Path with GeneCards custom track
LOC101929574 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101929574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929574 Gene

Proteins for LOC101929574 Gene

Post-translational modifications for LOC101929574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929574 Gene

Domains & Families for LOC101929574 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929574 Gene

Function for LOC101929574 Gene

Phenotypes From GWAS Catalog for LOC101929574 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929574 Gene

Localization for LOC101929574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929574 Gene

Pathways & Interactions for LOC101929574 Gene

PathCards logo

SuperPathways for LOC101929574 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929574 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929574 Gene

Drugs & Compounds for LOC101929574 Gene

No Compound Related Data Available

Transcripts for LOC101929574 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929574 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055E0CA_9606 lncRNA 598 4

RefSeq: NR_120661,

Ensembl: ENST00000417559 (view in UCSC) ,

LNCipedia: lnc-DYDC1-1:1,

NONCODE: NONHSAT015263.2,

URS00008C0783_9606 lncRNA 459 3

LncBook: HSALNT0165324,

LNCipedia: lnc-DYDC1-1:2,

NONCODE: NONHSAT015261.2,

URS0000D5A821_9606 lncRNA 705 2

LncBook: HSALNT0165323,

LNCipedia: lnc-DYDC1-1:7,

URS0000D5A843_9606 lncRNA 627 2

LncBook: HSALNT0165325,

LNCipedia: lnc-DYDC1-1:3,

URS00009B801A_9606 lncRNA 624 2

LncBook: HSALNT0165326,

NONCODE: NONHSAT157241.1,

LOC101929574 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929574 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929574 Gene

No ASD Table

Relevant External Links for LOC101929574 Gene

GeneLoc Exon Structure for
LOC101929574

Expression for LOC101929574 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929574 Gene

genes like me logo Genes that share expression patterns with LOC101929574: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929574 Gene

Orthologs for LOC101929574 Gene

Evolution for LOC101929574 Gene

ENSEMBL:
Gene Tree for LOC101929574 (if available)
TreeFam:
Gene Tree for LOC101929574 (if available)

No data available for Orthologs for LOC101929574 Gene

Paralogs for LOC101929574 Gene

No data available for Paralogs for LOC101929574 Gene

Variants for LOC101929574 Gene

Additional dbSNP identifiers (rs#s) for LOC101929574 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929574 Gene

Variant ID Type Subtype PubMed ID
nsv1141879 OTHER inversion 24896259
nsv469837 CNV loss 16826518
nsv470967 CNV loss 18288195
nsv7354 CNV deletion 18451855
nsv831924 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929574 Gene

Disorders for LOC101929574 Gene

Additional Disease Information for LOC101929574

No disorders were found for LOC101929574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929574 Gene

Publications for LOC101929574 Gene

No publications were found for LOC101929574 Gene.

No data available for Mastermind for LOC101929574 Gene

Products for LOC101929574 Gene

Sources for LOC101929574 Gene