Aliases for LOC101929538 Gene

Data sources for LOC101929538 Gene:

Subcategory (RNA class) for LOC101929538 Gene

lncRNA

Aliases for LOC101929538 Gene

External Ids for LOC101929538 Gene

Previous GeneCards Identifiers for LOC101929538 Gene

  • GC11U902015
  • GC11M128499

Summaries for LOC101929538 Gene

GeneCards Summary for LOC101929538 Gene

LOC101929538 (Uncharacterized LOC101929538) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929538 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929538 Gene

Genomics for LOC101929538 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J128684 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 250.7 +1.7 1721 0.8 CBX8 EZH2 ZNF143 USF2 FLI1 LOC101929538 ETS1-AS1 LOC105369568 ETS1
GH11J128688 Promoter/Enhancer 0.9 EPDnew ENCODE dbSUPER 250.7 +0.4 414 0.2 EGR1 EZH2 BACH1 FLI1 LOC101929538 HSALNG0088109 KCNJ1
GH11J128691 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 250.7 -0.5 -479 0.4 EZH2 LOC101929538 FLI1 HSALNG0088109 KCNJ1
GH11J128689 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 250.7 0.0 -46 0.3 EZH2 FLI1 LOC101929538 HSALNG0088109 KCNJ1
GH11J128687 Enhancer 0.6 ENCODE dbSUPER 250.7 +0.8 791 0.2 SPI1 EZH2 BACH1 FLI1 LOC101929538 HSALNG0088109 KCNJ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929538 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929538 Gene

Latest Assembly
chr11:128,614,251-128,686,922
(GRCh38/hg38)
Size:
72,672 bases
Orientation:
Minus strand

Previous Assembly
chr11:128,551,135-128,556,817
(GRCh37/hg19 by Entrez Gene)
Size:
5,683 bases
Orientation:
Minus strand

chr11:128,499,548-128,556,817
(GRCh37/hg19 by Ensembl)
Size:
57,270 bases
Orientation:
Minus strand

Genomic View for LOC101929538 Gene

Genes around LOC101929538 on UCSC Golden Path with GeneCards custom track
LOC101929538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929538 Gene

Proteins for LOC101929538 Gene

Post-translational modifications for LOC101929538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929538 Gene

Domains & Families for LOC101929538 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929538 Gene

Function for LOC101929538 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929538 Gene

Localization for LOC101929538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929538 Gene

Pathways & Interactions for LOC101929538 Gene

PathCards logo

SuperPathways for LOC101929538 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929538 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929538 Gene

Drugs & Compounds for LOC101929538 Gene

No Compound Related Data Available

Transcripts for LOC101929538 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929538 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004ACF7D_9606 lncRNA 1918 4

Ensembl: ENST00000501648 (view in UCSC) ,

LncBook: HSALNT0183242,

LNCipedia: lnc-ETS1-1:5,

NONCODE: NONHSAT160891.1,

URS00000AE50D_9606 lncRNA 898 3

Ensembl: ENST00000602773 (view in UCSC) ,

LNCipedia: lnc-ETS1-1:8,

NONCODE: NONHSAT025068.2,

URS0000343515_9606 lncRNA 541 3

Ensembl: ENST00000572256 (view in UCSC) ,

LNCipedia: lnc-ETS1-1:7,

NONCODE: NONHSAT025071.2,

URS0000319D13_9606 lncRNA 1157 2

Ensembl: ENST00000531784 (view in UCSC) ,

LNCipedia: lnc-ETS1-1:4,

URS0000D5F88E_9606 lncRNA 1003 2

Ensembl: ENST00000647054 (view in UCSC) ,

LNCipedia: lnc-ETS1-1:6,

LOC101929538 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929538 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929538 Gene

No ASD Table

Relevant External Links for LOC101929538 Gene

GeneLoc Exon Structure for
LOC101929538

Expression for LOC101929538 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929538 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101929538 Gene

This gene is overexpressed in Brain - Substantia nigra (x6.1), Spleen (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.9), Brain - Hippocampus (x4.5), and Brain - Putamen (basal ganglia) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929538

genes like me logo Genes that share expression patterns with LOC101929538: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929538 Gene

Orthologs for LOC101929538 Gene

Evolution for LOC101929538 Gene

ENSEMBL:
Gene Tree for LOC101929538 (if available)
TreeFam:
Gene Tree for LOC101929538 (if available)

No data available for Orthologs for LOC101929538 Gene

Paralogs for LOC101929538 Gene

No data available for Paralogs for LOC101929538 Gene

Variants for LOC101929538 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929538 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929538 Gene

Disorders for LOC101929538 Gene

No disorders were found for LOC101929538 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929538 Gene

Publications for LOC101929538 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101929538 Gene

Products for LOC101929538 Gene

Sources for LOC101929538 Gene