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Aliases for LOC101929524 Gene

Subcategory (RNA class) for LOC101929524 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929524 Gene

  • Uncharacterized LOC101929524 3
  • Novel Transcript, Antisense To FAM134B 5
  • AC022113.1 5

External Ids for LOC101929524 Gene

Previous GeneCards Identifiers for LOC101929524 Gene

  • GC05U901882

Summaries for LOC101929524 Gene

GeneCards Summary for LOC101929524 Gene

LOC101929524 (Uncharacterized LOC101929524) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929524 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929524 Gene

Genomics for LOC101929524 Gene

GeneHancer (GH) Regulatory Elements for LOC101929524 Gene

Promoters and enhancers for LOC101929524 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J016615 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 607.4 +0.7 693 4 ZNF473 MAFK YY1 POLR2A PRDM1 MZF1 GLIS2 ZNF300 ZNF600 PRDM10 RETREG1 LOC101929524 ENSG00000250415
GH05J016629 Promoter/Enhancer 1.1 Ensembl ENCODE 7.4 +13.8 13846 1.4 TRIM24 CREM ZSCAN4 ZNF318 ATF2 GABPA NR2C2 CEBPG ZNF398 POLR2A RETREG1 LOC101929524 GC05M016623 ENSG00000201370 GC05P016661
GH05J016626 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 5.4 +11.4 11421 1.3 NCOA3 SP1 RUNX3 JUND YY1 ZBTB33 HNF4A GABPA RXRA MAX RETREG1 LOC101929524 ZNF622 GC05M016623 ENSG00000201370 GC05P016661
GH05J016631 Enhancer 0.2 Ensembl 7 +16.1 16075 0.4 LOC101929524 ENSG00000201370 GC05M016623 GC05P016661
GH05J016591 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -21.2 -21225 6.6 ZNF121 ZSCAN21 SP1 ZNF547 RXRA ZIC2 MNT NFE2 JUND ATF3 RETREG1 ENSG00000250415 ZNF622 ENSG00000250981 LOC101929524
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929524 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929524 Gene

Genomic Locations for LOC101929524 Gene
chr5:16,615,926-16,629,969
(GRCh38/hg38)
Size:
14,044 bases
Orientation:
Plus strand
chr5:16,616,035-16,630,078
(GRCh37/hg19)
Size:
14,044 bases
Orientation:
Plus strand

Genomic View for LOC101929524 Gene

Genes around LOC101929524 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929524 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929524 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929524 Gene

Proteins for LOC101929524 Gene

Post-translational modifications for LOC101929524 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929524 Gene

Domains & Families for LOC101929524 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929524 Gene

Function for LOC101929524 Gene

Phenotypes From GWAS Catalog for LOC101929524 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929524 Gene

Localization for LOC101929524 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929524 Gene

Pathways & Interactions for LOC101929524 Gene

PathCards logo

SuperPathways for LOC101929524 Gene

No Data Available

Interacting Proteins for LOC101929524 Gene

Gene Ontology (GO) - Biological Process for LOC101929524 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929524 Gene

Drugs & Compounds for LOC101929524 Gene

No Compound Related Data Available

Transcripts for LOC101929524 Gene

mRNA/cDNA for LOC101929524 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929524 Gene

No ASD Table

Relevant External Links for LOC101929524 Gene

GeneLoc Exon Structure for
LOC101929524

Expression for LOC101929524 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929524 Gene

Orthologs for LOC101929524 Gene

Evolution for LOC101929524 Gene

ENSEMBL:
Gene Tree for LOC101929524 (if available)
TreeFam:
Gene Tree for LOC101929524 (if available)

No data available for Orthologs for LOC101929524 Gene

Paralogs for LOC101929524 Gene

No data available for Paralogs for LOC101929524 Gene

Variants for LOC101929524 Gene

Sequence variations from dbSNP and Humsavar for LOC101929524 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1326167901 uncertain-significance, Hereditary sensory and autonomic neuropathy type IIB 16,616,874(+) G/A/T intron_variant
rs137852736 pathogenic, Hereditary sensory and autonomic neuropathy type IIA 16,616,953(+) GAG/G intron_variant
rs1554026716 uncertain-significance, Hereditary sensory and autonomic neuropathy type IIB 16,616,687(+) G/C intron_variant
rs1554026745 uncertain-significance, Hereditary sensory and autonomic neuropathy type IIB 16,616,762(+) C/A intron_variant
rs528532732 uncertain-significance, Hereditary sensory and autonomic neuropathy type IIB 16,616,886(+) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929524 Gene

Variant ID Type Subtype PubMed ID
esv1409700 CNV deletion 17803354
esv2729837 CNV deletion 23290073
esv2729838 CNV deletion 23290073
esv2729839 CNV deletion 23290073
esv3565580 CNV deletion 23714750
nsv1109676 CNV deletion 24896259
nsv1144103 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929524 Gene

Disorders for LOC101929524 Gene

No disorders were found for LOC101929524 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929524 Gene

Publications for LOC101929524 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC101929524 Gene

Products for LOC101929524 Gene

Sources for LOC101929524 Gene

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