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Aliases for LOC101929516 Gene

Subcategory (RNA class) for LOC101929516 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101929516 Gene

  • Uncharacterized LOC101929516 3
  • AL365277.2 5

External Ids for LOC101929516 Gene

Previous GeneCards Identifiers for LOC101929516 Gene

  • GC01U903914

Summaries for LOC101929516 Gene

GeneCards Summary for LOC101929516 Gene

LOC101929516 (Uncharacterized LOC101929516) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929516 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929516 Gene

Genomics for LOC101929516 Gene

GeneHancer (GH) Regulatory Elements for LOC101929516 Gene

Promoters and enhancers for LOC101929516 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I039566 Enhancer 1 ENCODE dbSUPER 550.8 +1.9 1942 1.7 MLX NFIB ARID4B RARA ETS1 YY1 CREM THAP11 SMAD5 RXRA GC01M039568 GC01M039569 SNORA55 LOC101929516 OXCT2 ENSG00000182109 OXCT2P1 PABPC4
GH01I040256 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 19.3 +692.7 692743 3.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF NFYC-AS1 NFYC LOC105378672
GH01I040372 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +810.8 810783 5.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 SMAP2 PPIEL EXO5 PPIE TRIT1 ENSG00000259943 ENSG00000182109 NFYC-AS1 RLF NFYC
GH01I040096 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.9 +532.1 532069 1.5 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF766 PPT1 PPIE EXO5 TRIT1 NFYC PPIEL PABPC4 RLF LOC101929516 CAP1
GH01I040530 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.9 +967.1 967055 2.9 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF684 EXO5 LOC105378672 PPIE ZFP69 NFYC PABPC4 RLF LOC101929516 TRIT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101929516 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929516 Gene

Genomic Locations for LOC101929516 Gene
chr1:39,565,070-39,573,203
(GRCh38/hg38)
Size:
8,134 bases
Orientation:
Plus strand
chr1:40,030,832-40,038,875
(GRCh37/hg19)

Genomic View for LOC101929516 Gene

Genes around LOC101929516 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929516 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929516 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929516 Gene

Proteins for LOC101929516 Gene

Post-translational modifications for LOC101929516 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929516 Gene

Domains & Families for LOC101929516 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929516 Gene

Function for LOC101929516 Gene

Phenotypes From GWAS Catalog for LOC101929516 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929516 Gene

Localization for LOC101929516 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929516 Gene

Pathways & Interactions for LOC101929516 Gene

SuperPathways for LOC101929516 Gene

No Data Available

Interacting Proteins for LOC101929516 Gene

Gene Ontology (GO) - Biological Process for LOC101929516 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929516 Gene

Drugs & Compounds for LOC101929516 Gene

No Compound Related Data Available

Transcripts for LOC101929516 Gene

mRNA/cDNA for LOC101929516 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929516 Gene

No ASD Table

Relevant External Links for LOC101929516 Gene

GeneLoc Exon Structure for
LOC101929516

Expression for LOC101929516 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929516 Gene

genes like me logo Genes that share expression patterns with LOC101929516: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929516 Gene

Orthologs for LOC101929516 Gene

Evolution for LOC101929516 Gene

ENSEMBL:
Gene Tree for LOC101929516 (if available)
TreeFam:
Gene Tree for LOC101929516 (if available)

No data available for Orthologs for LOC101929516 Gene

Paralogs for LOC101929516 Gene

No data available for Paralogs for LOC101929516 Gene

Variants for LOC101929516 Gene

Sequence variations from dbSNP and Humsavar for LOC101929516 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000057139 -- 39,570,119(+) CCACCACCA/CCACCA intron_variant
rs1000078619 -- 39,564,646(+) G/A upstream_transcript_variant
rs1000385134 -- 39,565,276(+) C/A intron_variant
rs1000693709 -- 39,564,037(+) C/T upstream_transcript_variant
rs1000820414 -- 39,563,786(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929516 Gene

Disorders for LOC101929516 Gene

Additional Disease Information for LOC101929516

No disorders were found for LOC101929516 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929516 Gene

Publications for LOC101929516 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC101929516 Gene

Sources for LOC101929516 Gene

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