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Aliases for LOC101929512 Gene

Subcategory (RNA class) for LOC101929512 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929512 Gene

  • Uncharacterized LOC101929512 3

External Ids for LOC101929512 Gene

Previous GeneCards Identifiers for LOC101929512 Gene

  • GC02U902654

Summaries for LOC101929512 Gene

GeneCards Summary for LOC101929512 Gene

LOC101929512 (Uncharacterized LOC101929512) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929512 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929512 Gene

Genomics for LOC101929512 Gene

GeneHancer (GH) Regulatory Elements for LOC101929512 Gene

Promoters and enhancers for LOC101929512 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J161238 Enhancer 2 VISTA UCNEbase FANTOM5 ENCODE 0.4 +16.1 16064 2.1 ZNF687 YY1 SP7 MLLT1 GLIS2 POLR2A ZBTB8A ZNF600 PRDM10 BACH1 GC02M161238 GC02M161236 TBR1 LINC01806 ENSG00000226121 SLC4A10 LOC101929512 ENSG00000235724
GH02J161242 Promoter/Enhancer 1.7 UCNEbase Ensembl ENCODE 0.4 +10.1 10084 3.4 NKRF ZNF687 KAT8 IKZF1 POLR2A IKZF2 SMAD5 TRIM22 ZFX KMT2B LINC01806 PIR61323 GC02M161238 LOC101929512 ENSG00000235724
GH02J161251 Enhancer 1 Ensembl ENCODE 0.7 +3.5 3542 0.6 ELF3 CTCF RAD21 IKZF1 REST TRIM22 IKZF2 IRF2 RFX1 ZSCAN29 LINC01806 LOC101929512 PIR61323 ENSG00000235724
GH02J161257 Enhancer 0.6 Ensembl 0.7 -3.1 -3058 0.6 SP1 RXRA GATAD2A YY1 JUND TFAP4 HNF4A REST HNF4G TAF1 LINC01806 LOC101929512 ENSG00000225813 ENSG00000235724
GH02J161273 Enhancer 0.7 Ensembl 0.4 -18.8 -18757 0.4 ELF3 CTCF TRIM24 RAD21 REST TRIM22 ZNF311 FOXK2 FOXA2 ZBTB25 LINC01806 ENSG00000225813 LOC101929512 ENSG00000235724
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929512 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929512 Gene

Genomic Locations for LOC101929512 Gene
chr2:161,223,258-161,254,643
(GRCh38/hg38)
Size:
31,386 bases
Orientation:
Minus strand

Genomic View for LOC101929512 Gene

Genes around LOC101929512 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929512 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929512 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929512 Gene

Proteins for LOC101929512 Gene

Post-translational modifications for LOC101929512 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929512 Gene

Domains & Families for LOC101929512 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929512 Gene

Function for LOC101929512 Gene

Phenotypes From GWAS Catalog for LOC101929512 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929512 Gene

Localization for LOC101929512 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929512 Gene

Pathways & Interactions for LOC101929512 Gene

PathCards logo

SuperPathways for LOC101929512 Gene

No Data Available

Interacting Proteins for LOC101929512 Gene

Gene Ontology (GO) - Biological Process for LOC101929512 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929512 Gene

Drugs & Compounds for LOC101929512 Gene

No Compound Related Data Available

Transcripts for LOC101929512 Gene

mRNA/cDNA for LOC101929512 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929512 Gene

No ASD Table

Relevant External Links for LOC101929512 Gene

GeneLoc Exon Structure for
LOC101929512

Expression for LOC101929512 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929512 Gene

Orthologs for LOC101929512 Gene

No data available for Orthologs and Evolution for LOC101929512 Gene

Paralogs for LOC101929512 Gene

No data available for Paralogs for LOC101929512 Gene

Variants for LOC101929512 Gene

Sequence variations from dbSNP and Humsavar for LOC101929512 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000116131 -- 161,236,099(-) T/A intron_variant
rs1000172595 -- 161,228,194(-) T/C intron_variant
rs1000188532 -- 161,236,387(-) G/T intron_variant
rs1000227274 -- 161,237,487(-) A/C intron_variant
rs1000367698 -- 161,254,264(-) ACAACAA/ACAA intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929512 Gene

Variant ID Type Subtype PubMed ID
dgv7140n54 CNV loss 21841781
esv3302641 CNV tandem duplication 20981092
esv3323881 CNV duplication 20981092
esv3378589 CNV insertion 20981092
esv998796 CNV insertion 20482838
nsv1117263 CNV tandem duplication 24896259
nsv437557 CNV loss 16327808
nsv459934 CNV loss 19166990
nsv478156 CNV novel sequence insertion 20440878
nsv583500 CNV loss 21841781
nsv834437 CNV gain 17160897
nsv955277 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929512 Gene

Disorders for LOC101929512 Gene

No disorders were found for LOC101929512 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929512 Gene

Publications for LOC101929512 Gene

  1. Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. (PMID: 25201988) Rietveld CA … Koellinger PD (Proceedings of the National Academy of Sciences of the United States of America 2014) 3 58
  2. GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. (PMID: 23722424) Rietveld CA … Koellinger PD (Science (New York, N.Y.) 2013) 3 58

No data available for External Links for LOC101929512 Gene

Products for LOC101929512 Gene

Sources for LOC101929512 Gene

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