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Aliases for LOC101929488 Gene

Subcategory (RNA class) for LOC101929488 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929488 Gene

  • Uncharacterized LOC101929488 3
  • Novel Transcript 5
  • AC068075.1 5

External Ids for LOC101929488 Gene

Previous GeneCards Identifiers for LOC101929488 Gene

  • GC08U901832

Summaries for LOC101929488 Gene

GeneCards Summary for LOC101929488 Gene

LOC101929488 (Uncharacterized LOC101929488) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929488 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929488 Gene

Genomics for LOC101929488 Gene

GeneHancer (GH) Regulatory Elements for LOC101929488 Gene

Promoters and enhancers for LOC101929488 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J057343 Enhancer 0.8 Ensembl ENCODE 600.7 -0.4 -386 0.8 CTCF RAD21 ZBTB33 ARID2 ZNF143 REST TRIM22 SMC3 NRF1 ZNF654 LOC101929488 RNU6-596P
GH08J057362 Enhancer 0.4 Ensembl 0.4 +19.1 19114 1 ZNF24 ZFP91 LOC101929488 GC08M057366
GH08J057378 Enhancer 0.5 Ensembl 0.3 +34.9 34914 1 CREB1 RFX1 CTBP1 PKNOX1 GC08M057366 LOC101929488
GH08J057300 Enhancer 0.4 Ensembl ENCODE 0.3 -42.7 -42687 0.8 RNU6-596P LOC101929488
GH08J057326 Enhancer 0.2 Ensembl 0.4 -17.0 -16986 0.4 LOC101929488 RNU6-596P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929488 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929488 Gene

Genomic Locations for LOC101929488 Gene
chr8:57,343,787-57,364,857
(GRCh38/hg38)
Size:
21,071 bases
Orientation:
Plus strand
chr8:58,256,346-58,277,416
(GRCh37/hg19)
Size:
21,071 bases
Orientation:
Plus strand

Genomic View for LOC101929488 Gene

Genes around LOC101929488 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929488 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929488 Gene

Proteins for LOC101929488 Gene

Post-translational modifications for LOC101929488 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929488 Gene

Domains & Families for LOC101929488 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929488 Gene

Function for LOC101929488 Gene

Phenotypes From GWAS Catalog for LOC101929488 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929488 Gene

Localization for LOC101929488 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929488 Gene

Pathways & Interactions for LOC101929488 Gene

PathCards logo

SuperPathways for LOC101929488 Gene

No Data Available

Interacting Proteins for LOC101929488 Gene

Gene Ontology (GO) - Biological Process for LOC101929488 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929488 Gene

Drugs & Compounds for LOC101929488 Gene

No Compound Related Data Available

Transcripts for LOC101929488 Gene

mRNA/cDNA for LOC101929488 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929488 Gene

No ASD Table

Relevant External Links for LOC101929488 Gene

GeneLoc Exon Structure for
LOC101929488

Expression for LOC101929488 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929488 Gene

Orthologs for LOC101929488 Gene

Evolution for LOC101929488 Gene

ENSEMBL:
Gene Tree for LOC101929488 (if available)
TreeFam:
Gene Tree for LOC101929488 (if available)

No data available for Orthologs for LOC101929488 Gene

Paralogs for LOC101929488 Gene

No data available for Paralogs for LOC101929488 Gene

Variants for LOC101929488 Gene

Sequence variations from dbSNP and Humsavar for LOC101929488 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000042243 -- 57,351,798(+) G/A intron_variant
rs1000129275 -- 57,348,751(+) TGTTGT/TGT intron_variant
rs1000275831 -- 57,349,660(+) G/T intron_variant
rs1000323240 -- 57,354,284(+) T/C intron_variant
rs1000330106 -- 57,365,116(+) T/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929488 Gene

Variant ID Type Subtype PubMed ID
esv2759618 CNV gain+loss 17122850

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929488 Gene

Disorders for LOC101929488 Gene

No disorders were found for LOC101929488 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929488 Gene

Publications for LOC101929488 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC101929488 Gene

Products for LOC101929488 Gene

Sources for LOC101929488 Gene

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