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Aliases for LOC101929473 Gene
Subcategory (RNA class) for LOC101929473 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC101929473 Gene
External Ids for LOC101929473 Gene
- Entrez Gene: 101929473
Previous GeneCards Identifiers for LOC101929473 Gene
- GC11U902071
- GC11P127067
Summaries for LOC101929473 Gene
GeneCards Summary for LOC101929473 Gene
LOC101929473 (Uncharacterized LOC101929473) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101929473 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929473 Gene
Genomics for LOC101929473 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101929473 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J127075 | Enhancer | 1 | Ensembl ENCODE | 0.2 | +52.4 | 52405 | 1.5 | CTCF ATF7 ZNF7 BACH1 JUND ZNF143 RAD21 TCF12 IKZF2 TRIM22 | KIRREL3 LOC105369562 ENSG00000255087 LOC101929473 | |
| GH11J127105 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 0.2 | +84.6 | 84592 | 2.3 | REST SP1 RAD21 YY1 GABPA ZBTB33 HNF4A RXRA MAX SMARCA4 | ENSG00000255087 LOC105369562 LOC101929473 KIRREL3 | |
| GH11J127058 | Enhancer | 0.4 | Ensembl | 0.3 | +36.9 | 36853 | 0.8 | RFX1 POLR2A SMARCA4 | ENSG00000255087 LOC101929473 LOC105369562 KIRREL3 | |
| GH11J127052 | Enhancer | 0.3 | Ensembl | 0.3 | +30.7 | 30653 | 0.8 | NFE2 | LOC101929473 ENSG00000255087 KIRREL3 LOC105369562 | |
| GH11J127056 | Enhancer | 0.3 | FANTOM5 | 0.3 | +35.2 | 35174 | 0.1 | ZNF512 | ENSG00000255087 LOC101929473 KIRREL3 LOC105369562 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101929473 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101929473 Gene
Genomic Locations for LOC101929473 Gene
- chr11:127,021,748-127,101,320
- (GRCh38/hg38)
- Size:
- 79,573 bases
- Orientation:
- Plus strand
Genomic View for LOC101929473 Gene
Genes around LOC101929473 on UCSC Golden Path with GeneCards custom track
LOC101929473 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q24.2 by Entrez Gene
LOC101929473 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101929473 Gene
Proteins for LOC101929473 Gene
Post-translational modifications for LOC101929473 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101929473
- Origene Custom Protein Services for LOC101929473
No data available for DME Specific Peptides for LOC101929473 Gene
Domains & Families for LOC101929473 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929473 Gene
Function for LOC101929473 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929473 Gene
Localization for LOC101929473 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929473 Gene
Transcripts for LOC101929473 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929473 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075B3B8_9606 | lncRNA | 2323 | 2 |
RefSeq: NR_120578, LNCipedia: lnc-ST3GAL4-55:12, |
| URS00008B7B85_9606 | lncRNA | 1667 | 3 |
LncBook: HSALNT0183043, LNCipedia: lnc-ST3GAL4-55:1, NONCODE: NONHSAT025044.2, |
| URS00008B2D7C_9606 | lncRNA | 1571 | 3 |
LncBook: HSALNT0183044, LNCipedia: lnc-ST3GAL4-55:2, NONCODE: NONHSAT025045.2, |
| URS00008B2521_9606 | lncRNA | 1161 | 3 |
LncBook: HSALNT0183047, LNCipedia: lnc-ST3GAL4-55:7, NONCODE: NONHSAT025048.2, |
| URS00008B4B63_9606 | lncRNA | 614 | 3 |
LncBook: HSALNT0183060, LNCipedia: lnc-ST3GAL4-55:16, NONCODE: NONHSAT025053.2, |
LOC101929473 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101929473 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101929473 Gene
- GeneLoc Exon Structure for
- LOC101929473
Expression for LOC101929473 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929473
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929473 Gene
Orthologs for LOC101929473 Gene
No data available for Orthologs and Evolution for LOC101929473 Gene
Paralogs for LOC101929473 Gene
No data available for Paralogs for LOC101929473 Gene
Variants for LOC101929473 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv248e199 | CNV | deletion | 23128226 |
| esv2581757 | CNV | deletion | 19546169 |
| esv2673484 | CNV | deletion | 23128226 |
| esv27000 | CNV | loss | 19812545 |
| esv2745220 | CNV | deletion | 23290073 |
| esv3306062 | CNV | mobile element insertion | 20981092 |
| esv3309143 | CNV | mobile element insertion | 20981092 |
| esv3396024 | CNV | insertion | 20981092 |
| esv3628015 | CNV | loss | 21293372 |
| esv3628016 | CNV | loss | 21293372 |
| esv3628017 | CNV | loss | 21293372 |
| nsv528676 | CNV | loss | 19592680 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929473 Gene
Disorders for LOC101929473 Gene
No disorders were found for LOC101929473 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929473 Gene
Publications for LOC101929473 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC101929473 Gene
Products for LOC101929473 Gene
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC101929473 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB