Aliases for LOC101929473 Gene

Data sources for LOC101929473 Gene:

Subcategory (RNA class) for LOC101929473 Gene

lncRNA

Aliases for LOC101929473 Gene

External Ids for LOC101929473 Gene

Previous GeneCards Identifiers for LOC101929473 Gene

  • GC11U902071
  • GC11P127067

Summaries for LOC101929473 Gene

GeneCards Summary for LOC101929473 Gene

LOC101929473 (Uncharacterized LOC101929473) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929473 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929473 Gene

Genomics for LOC101929473 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929473 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J127017 Enhancer 0.5 Ensembl 250.7 +0.6 641 0.4 CTCF FOSL1 RAD21 JUND BHLHE40 ATF3 FOS IKZF1 LOC101929473 KIRREL3-AS3 lnc-ST3GAL4-8 KIRREL3 HSALNG0088051
GH11J127105 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 10.7 +89.2 89242 2.4 RXRA ZBTB33 RAD21 MAX SP1 HNF4A REST GABPA YY1 HSALNG0088050 LOC101929473 LOC105369562 KIRREL3
GH11J126790 Enhancer 0.7 Ensembl ENCODE 9.7 -226.5 -226465 1.1 CTCF RAD21 MAFK ATF2 BHLHE40 NFE2L2 CEBPB FOS JUND LOC101929473 AB372608 lnc-ST3GAL4-6 RF00998-027 KIRREL3 lnc-KIRREL3-1 ST3GAL4
GH11J127109 Enhancer 0.4 Ensembl ENCODE 11 +93.1 93142 1.8 SP1 LOC105369562 LOC101929473 ENSG00000272642 KIRREL3
GH11J127039 Enhancer 0.2 Ensembl 11.3 +22.3 22342 0.2 LOC101929473 KIRREL3 KIRREL3-AS3 ENSG00000255317 HSALNG0088051
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929473 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929473 Gene

Latest Assembly
chr11:127,017,159-127,172,949
(GRCh38/hg38)
Size:
155,791 bases
Orientation:
Plus strand

Previous Assembly
chr11:126,936,897-126,971,201
(GRCh37/hg19 by Entrez Gene)
Size:
34,305 bases
Orientation:
Plus strand

chr11:126,936,897-126,971,215
(GRCh37/hg19 by Ensembl)
Size:
34,319 bases
Orientation:
Plus strand

Genomic View for LOC101929473 Gene

Genes around LOC101929473 on UCSC Golden Path with GeneCards custom track
LOC101929473 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929473 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929473 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929473 Gene

Proteins for LOC101929473 Gene

Post-translational modifications for LOC101929473 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929473 Gene

Domains & Families for LOC101929473 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929473 Gene

Function for LOC101929473 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929473 Gene

Localization for LOC101929473 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929473 Gene

Pathways & Interactions for LOC101929473 Gene

PathCards logo

SuperPathways for LOC101929473 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929473 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929473 Gene

Drugs & Compounds for LOC101929473 Gene

No Compound Related Data Available

Transcripts for LOC101929473 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929473 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D288E_9606 lncRNA 564 3

Ensembl: ENST00000609688 (view in UCSC) ,

LncBook: HSALNT0183069,

LNCipedia: lnc-ST3GAL4-55:18,

URS000075B3B8_9606 lncRNA 2323 2

RefSeq: NR_120578,

LNCipedia: lnc-ST3GAL4-55:12,

URS0000D5F65E_9606 lncRNA 2004 2

Ensembl: ENST00000647195 (view in UCSC) ,

LNCipedia: lnc-ST3GAL4-55:5,

URS0000D642D0_9606 lncRNA 1739 2

Ensembl: ENST00000530177 (view in UCSC) ,

LNCipedia: lnc-ST3GAL4-55:4,

URS0000D6342E_9606 lncRNA 1099 2

Ensembl: ENST00000642327 (view in UCSC) ,

LNCipedia: lnc-ST3GAL4-55:17,

LOC101929473 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929473 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929473 Gene

No ASD Table

Relevant External Links for LOC101929473 Gene

GeneLoc Exon Structure for
LOC101929473

Expression for LOC101929473 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929473 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929473

genes like me logo Genes that share expression patterns with LOC101929473: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929473 Gene

Orthologs for LOC101929473 Gene

Evolution for LOC101929473 Gene

ENSEMBL:
Gene Tree for LOC101929473 (if available)
TreeFam:
Gene Tree for LOC101929473 (if available)

No data available for Orthologs for LOC101929473 Gene

Paralogs for LOC101929473 Gene

No data available for Paralogs for LOC101929473 Gene

Variants for LOC101929473 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929473 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101929473 Gene

Variant ID Type Subtype PubMed ID
dgv248e199 CNV deletion 23128226
esv2581757 CNV deletion 19546169
esv2673484 CNV deletion 23128226
esv27000 CNV loss 19812545
esv2745220 CNV deletion 23290073
esv3306062 CNV mobile element insertion 20981092
esv3309143 CNV mobile element insertion 20981092
esv3396024 CNV insertion 20981092
esv3628015 CNV loss 21293372
esv3628016 CNV loss 21293372
esv3628017 CNV loss 21293372
nsv528676 CNV loss 19592680

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929473 Gene

Disorders for LOC101929473 Gene

Additional Disease Information for LOC101929473

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101929473 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929473 Gene

Publications for LOC101929473 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101929473 Gene

Products for LOC101929473 Gene

Sources for LOC101929473 Gene