Aliases for LOC101929470 Gene

Subcategory (RNA class) for LOC101929470 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LOC101929470 Gene

  • Uncharacterized LOC101929470 3
  • HSALNG0064310 169
  • NONHSAG049879 94
  • HSALNG0064295 169
  • HSALNG0064297 169
  • LINC00589 170

External Ids for LOC101929470 Gene

Previous GeneCards Identifiers for LOC101929470 Gene

  • GC08U901669

Summaries for LOC101929470 Gene

GeneCards Summary for LOC101929470 Gene

LOC101929470 (Uncharacterized LOC101929470) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929470 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929470 Gene

Genomics for LOC101929470 Gene

GeneHancer (GH) Regulatory Elements for LOC101929470 Gene

Promoters and enhancers for LOC101929470 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J029827 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.6 +2.4 2404 6.2 POLR2A CEBPA CEBPB JUND EP300 USF1 FOS FOSL2 RNU6-1218P LOC101929470 lnc-LEPROTL1-8 lnc-LEPROTL1-9 ENSG00000248964
GH08J029818 Enhancer 0.9 Ensembl ENCODE 0.4 +9.2 9206 2.2 ZNF785 TRIM22 ZNF133 SOX6 ZNF473 ZNF548 CDC5L ZSCAN4 ZNF239 ZNF311 GTF2E2 ENSG00000259366 ENSG00000254086 HSPA8P11 LINC02209 ENSG00000254316 PPP2CB RBPMS INTS9 RBPMS-AS1
GH08J029815 Enhancer 0.5 Ensembl dbSUPER 0.4 +12.8 12803 0.2 POLR2A JUND lnc-LEPROTL1-8 LOC101929470 lnc-LEPROTL1-9 ENSG00000248964
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929470 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929470 Gene

Genomic Locations for LOC101929470 Gene
chr8:29,815,004-29,828,504
(GRCh38/hg38)
Size:
13,501 bases
Orientation:
Minus strand

Genomic View for LOC101929470 Gene

Genes around LOC101929470 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929470 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929470 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929470 Gene

Proteins for LOC101929470 Gene

Post-translational modifications for LOC101929470 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929470 Gene

Domains & Families for LOC101929470 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929470 Gene

Function for LOC101929470 Gene

Phenotypes From GWAS Catalog for LOC101929470 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929470 Gene

Localization for LOC101929470 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929470 Gene

Pathways & Interactions for LOC101929470 Gene

PathCards logo

SuperPathways for LOC101929470 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929470 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929470 Gene

Drugs & Compounds for LOC101929470 Gene

No Compound Related Data Available

Transcripts for LOC101929470 Gene

mRNA/cDNA for LOC101929470 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(6) LNCipedia transcripts :
(4) LncBook transcripts :
(8) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929470 Gene

No ASD Table

Relevant External Links for LOC101929470 Gene

GeneLoc Exon Structure for
LOC101929470

Expression for LOC101929470 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929470 Gene

genes like me logo Genes that share expression patterns with LOC101929470: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929470 Gene

Orthologs for LOC101929470 Gene

No data available for Orthologs and Evolution for LOC101929470 Gene

Paralogs for LOC101929470 Gene

No data available for Paralogs for LOC101929470 Gene

Variants for LOC101929470 Gene

Sequence variations from dbSNP and Humsavar for LOC101929470 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000069546 -- 29,825,429(-) G/A/T intron_variant
rs1000853132 -- 29,829,610(-) G/A upstream_transcript_variant
rs1001064759 -- 29,823,499(-) T/G intron_variant
rs1001491074 -- 29,823,268(-) A/T intron_variant
rs1001518344 -- 29,826,772(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929470 Gene

Variant ID Type Subtype PubMed ID
esv3616777 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929470 Gene

Disorders for LOC101929470 Gene

No disorders were found for LOC101929470 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929470 Gene

Publications for LOC101929470 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC101929470 Gene

Products for LOC101929470 Gene

Sources for LOC101929470 Gene