Aliases for LOC101929427 Gene

Data sources for LOC101929427 Gene:

Subcategory (RNA class) for LOC101929427 Gene

lncRNA

Aliases for LOC101929427 Gene

External Ids for LOC101929427 Gene

Previous GeneCards Identifiers for LOC101929427 Gene

  • GC11U902033
  • GC11P126522
  • GC11P126652

Summaries for LOC101929427 Gene

GeneCards Summary for LOC101929427 Gene

LOC101929427 (Uncharacterized LOC101929427) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929427 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929427 Gene

Genomics for LOC101929427 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J126459 Enhancer 0.3 ENCODE 250.7 -0.5 -470 0.7 MAFK NFE2L2 HSALNG0088034 KIRREL3-AS1 LOC101929427 lnc-ST3GAL4-1 ST3GAL4 KIRREL3
GH11J126458 Enhancer 0.2 FANTOM5 250.7 -1.3 -1319 0.1 HSALNG0088034 KIRREL3-AS1 LOC101929427 lnc-ST3GAL4-1 ST3GAL4 KIRREL3
GH11J126452 Enhancer 1.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -7.7 -7682 1.4 ZIC2 ZNF18 POLR2A MNT LOC101929427 lnc-ST3GAL4-1 HSALNG0088034 KIRREL3-AS1 ST3GAL4 KIRREL3
GH11J126480 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.3 +20.7 20718 1.2 TBP CEBPA MNT CTCF ELF1 SIN3A ELK1 GABPA REST MAX ENSG00000255062 ENSG00000254905 TIRAP DCPS KIRREL3 FOXRED1 SRPRA Hsa-Mir-574_5p-014 KIRREL3-AS1 LOC101929427
GH11J126483 Enhancer 0.9 Ensembl ENCODE 0.3 +24.6 24643 2.4 IRF4 ZNF316 RAD21 SPI1 NFE2 BHLHE40 CTCF NFE2L2 MAFK RAD51 Hsa-Mir-574_5p-014 KIRREL3-AS1 LOC101929427 HSALNG0088034 ST3GAL4 KIRREL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929427 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929427 Gene

Latest Assembly
chr11:126,460,183-126,682,110
(GRCh38/hg38)
Size:
221,928 bases
Orientation:
Plus strand

Previous Assembly
chr11:126,522,673-126,551,999
(GRCh37/hg19 by Entrez Gene)
Size:
29,327 bases
Orientation:
Plus strand

chr11:126,522,747-126,551,999
(GRCh37/hg19 by Ensembl)
Size:
29,253 bases
Orientation:
Plus strand

Genomic View for LOC101929427 Gene

Genes around LOC101929427 on UCSC Golden Path with GeneCards custom track
LOC101929427 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929427 Gene

Proteins for LOC101929427 Gene

Post-translational modifications for LOC101929427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929427 Gene

Domains & Families for LOC101929427 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929427 Gene

Function for LOC101929427 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929427 Gene

Localization for LOC101929427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929427 Gene

Pathways & Interactions for LOC101929427 Gene

PathCards logo

SuperPathways for LOC101929427 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929427 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929427 Gene

Drugs & Compounds for LOC101929427 Gene

No Compound Related Data Available

Transcripts for LOC101929427 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929427 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000050695B_9606 lncRNA 408 4

Ensembl: ENST00000534620 (view in UCSC) ,

LncBook: HSALNT0182994,

LNCipedia: lnc-ST3GAL4-4:4,

NONCODE: NONHSAT159845.1,

URS000075B28E_9606 lncRNA 475 2

RefSeq: NR_120532,

LNCipedia: lnc-ST3GAL4-4:1,

URS0000088E76_9606 lncRNA 401 2

Ensembl: ENST00000550747 (view in UCSC) ,

LNCipedia: lnc-ST3GAL4-4:3,

URS000075E120_9606 lncRNA 408 1

RefSeq: NR_120533,

URS00008B4810_9606 lncRNA 446 2

LNCipedia: lnc-ST3GAL4-4:2,

NONCODE: NONHSAT025031.2,

LOC101929427 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929427 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929427 Gene

No ASD Table

Relevant External Links for LOC101929427 Gene

GeneLoc Exon Structure for
LOC101929427

Expression for LOC101929427 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929427 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101929427 Gene

This gene is overexpressed in Liver (x40.5).
genes like me logo Genes that share expression patterns with LOC101929427: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929427 Gene

Orthologs for LOC101929427 Gene

Evolution for LOC101929427 Gene

ENSEMBL:
Gene Tree for LOC101929427 (if available)
TreeFam:
Gene Tree for LOC101929427 (if available)

No data available for Orthologs for LOC101929427 Gene

Paralogs for LOC101929427 Gene

No data available for Paralogs for LOC101929427 Gene

Variants for LOC101929427 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929427 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929427 Gene

Disorders for LOC101929427 Gene

Additional Disease Information for LOC101929427

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101929427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929427 Gene

Publications for LOC101929427 Gene

No publications were found for LOC101929427 Gene.

No data available for Mastermind for LOC101929427 Gene

Products for LOC101929427 Gene

Sources for LOC101929427 Gene