Aliases for LOC101929372 Gene

Aliases for LOC101929372 Gene

  • Uncharacterized LOC101929372 3
  • Uncharacterized Protein LOC101929372 3
  • Novel Transcript 5
  • Lnc-ATP6V1E1-1 170
  • NONHSAG033211 94
  • AC007666.1 5

External Ids for LOC101929372 Gene

Previous GeneCards Identifiers for LOC101929372 Gene

  • GC22U900888

Summaries for LOC101929372 Gene

GeneCards Summary for LOC101929372 Gene

LOC101929372 (Uncharacterized LOC101929372) is a Protein Coding gene.

Additional gene information for LOC101929372 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929372 Gene

Genomics for LOC101929372 Gene

GeneHancer (GH) Regulatory Elements for LOC101929372 Gene

Promoters and enhancers for LOC101929372 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J017594 Enhancer 0.8 Ensembl ENCODE 0.4 -5.9 -5934 1.4 RELA CREM ZBED1 EGR1 IKZF1 IKZF2 PKNOX1 TRIM22 DPF2 EED ATP6V1E1 TPTEP1 LOC101929372 piR-38088 lnc-ATP6V1E1-2
GH22J017580 Enhancer 0.8 Ensembl ENCODE 0.4 +8.5 8492 1.4 L3MBTL2 SP1 RXRA SOX6 SAP130 TFDP1 NR2F2 RAD21 ZNF143 HNF4A CECR2 RF00017-3743 LOC101929372 LOC105372850 SLC25A18
GH22J017600 Enhancer 0.5 ENCODE 0.4 -12.2 -12211 1.4 GATA3 TCF7L2 ZNF217 ZNF121 PRDM1 ZXDB DPF2 SMARCE1 SLC25A18 ATP6V1E1 BCL2L13 BID LOC101929372 piR-38088 lnc-ATP6V1E1-2
GH22J017608 Enhancer 0.2 Ensembl 0.4 -19.3 -19309 0.2 piR-38088 LOC101929372 ATP6V1E1 lnc-ATP6V1E1-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929372 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929372 Gene

Genomic Locations for LOC101929372 Gene
chr22:17,580,157-17,589,192
(GRCh38/hg38)
Size:
9,036 bases
Orientation:
Minus strand

Genomic View for LOC101929372 Gene

Genes around LOC101929372 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929372 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929372 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929372 Gene

Proteins for LOC101929372 Gene

Post-translational modifications for LOC101929372 Gene

No Post-translational modifications

Other Protein References for LOC101929372 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC101929372 Gene

Domains & Families for LOC101929372 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929372 Gene

Function for LOC101929372 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929372 Gene

Localization for LOC101929372 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929372 Gene

Pathways & Interactions for LOC101929372 Gene

PathCards logo

SuperPathways for LOC101929372 Gene

No Data Available

Interacting Proteins for LOC101929372 Gene

Gene Ontology (GO) - Biological Process for LOC101929372 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929372 Gene

Drugs & Compounds for LOC101929372 Gene

No Compound Related Data Available

Transcripts for LOC101929372 Gene

mRNA/cDNA for LOC101929372 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929372 Gene

No ASD Table

Relevant External Links for LOC101929372 Gene

GeneLoc Exon Structure for
LOC101929372

Expression for LOC101929372 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929372 Gene

genes like me logo Genes that share expression patterns with LOC101929372: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929372 Gene

Orthologs for LOC101929372 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC101929372 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101059583 32
  • 99.6 (n)
Species where no ortholog for LOC101929372 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC101929372 Gene

ENSEMBL:
Gene Tree for LOC101929372 (if available)
TreeFam:
Gene Tree for LOC101929372 (if available)

Paralogs for LOC101929372 Gene

No data available for Paralogs for LOC101929372 Gene

Variants for LOC101929372 Gene

Sequence variations from dbSNP and Humsavar for LOC101929372 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000208610 -- 17,584,178(-) G/C intron_variant
rs1000222450 -- 17,589,484(-) A/C upstream_transcript_variant
rs1000307803 -- 17,589,207(-) G/A upstream_transcript_variant
rs1000558609 -- 17,590,744(-) G/A upstream_transcript_variant
rs1000809240 -- 17,580,033(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929372 Gene

Variant ID Type Subtype PubMed ID
dgv1278e212 CNV loss 25503493
dgv4464n100 CNV gain 25217958
dgv4465n100 CNV gain 25217958
esv2657458 CNV deletion 23128226
esv3568229 CNV loss 25503493
esv3647225 CNV loss 21293372
esv3647226 CNV loss 21293372
esv3893428 CNV loss 25118596
nsv1065055 CNV gain 25217958
nsv3553 CNV deletion 18451855
nsv428385 CNV gain+loss 18775914
nsv510802 CNV deletion 20534489
nsv526826 CNV gain 19592680
nsv9871 CNV loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929372 Gene

Disorders for LOC101929372 Gene

No disorders were found for LOC101929372 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929372 Gene

Publications for LOC101929372 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC101929372 Gene

Products for LOC101929372 Gene

Sources for LOC101929372 Gene