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Aliases for LOC101929297 Gene

Subcategory (RNA class) for LOC101929297 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929297 Gene

  • Uncharacterized LOC101929297 3
  • Novel Transcript 5
  • AL121956.1 5

External Ids for LOC101929297 Gene

Previous GeneCards Identifiers for LOC101929297 Gene

  • GC06U902406

Summaries for LOC101929297 Gene

GeneCards Summary for LOC101929297 Gene

LOC101929297 (Uncharacterized LOC101929297) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929297 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929297 Gene

Genomics for LOC101929297 Gene

GeneHancer (GH) Regulatory Elements for LOC101929297 Gene

Promoters and enhancers for LOC101929297 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J166235 Enhancer 0.6 Ensembl ENCODE 600.7 -0.4 -368 3.6 CTCF MAX LOC101929297 SFT2D1 ENSG00000280991
GH06J166244 Enhancer 0.5 ENCODE 0.4 +7.7 7694 1.2 MLLT1 IKZF1 RUNX3 NBN ATF7 SFT2D1 TBXT GNG5P1 LOC101929297 ENSG00000280850
GH06J166229 Enhancer 0.4 Ensembl 0.4 -6.4 -6368 3.2 ZFHX2 EGR2 ENSG00000280991 RNU6-153P PRR18 MPC1 LOC101929297
GH06J166252 Enhancer 0.5 ENCODE 0.4 +16.7 16671 1.1 NRF1 EZH2 GABPA CTCF SFT2D1 MPC1 GNG5P1 LOC101929297 ENSG00000280850
GH06J166241 Enhancer 0.2 Ensembl 0.7 +4.3 4332 0.2 GNG5P1 GC06M166240 LOC101929297 ENSG00000280850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929297 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929297 Gene

Genomic Locations for LOC101929297 Gene
chr6:166,236,969-166,256,947
(GRCh38/hg38)
Size:
19,979 bases
Orientation:
Plus strand
chr6:166,650,457-166,657,197
(GRCh37/hg19)
Size:
6,741 bases
Orientation:
Plus strand

Genomic View for LOC101929297 Gene

Genes around LOC101929297 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929297 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929297 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929297 Gene

Proteins for LOC101929297 Gene

Post-translational modifications for LOC101929297 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929297 Gene

Domains & Families for LOC101929297 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929297 Gene

Function for LOC101929297 Gene

Phenotypes From GWAS Catalog for LOC101929297 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929297 Gene

Localization for LOC101929297 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929297 Gene

Pathways & Interactions for LOC101929297 Gene

PathCards logo

SuperPathways for LOC101929297 Gene

No Data Available

Interacting Proteins for LOC101929297 Gene

Gene Ontology (GO) - Biological Process for LOC101929297 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929297 Gene

Drugs & Compounds for LOC101929297 Gene

No Compound Related Data Available

Transcripts for LOC101929297 Gene

mRNA/cDNA for LOC101929297 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929297 Gene

No ASD Table

Relevant External Links for LOC101929297 Gene

GeneLoc Exon Structure for
LOC101929297

Expression for LOC101929297 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929297 Gene

Orthologs for LOC101929297 Gene

Evolution for LOC101929297 Gene

ENSEMBL:
Gene Tree for LOC101929297 (if available)
TreeFam:
Gene Tree for LOC101929297 (if available)

No data available for Orthologs for LOC101929297 Gene

Paralogs for LOC101929297 Gene

No data available for Paralogs for LOC101929297 Gene

Variants for LOC101929297 Gene

Sequence variations from dbSNP and Humsavar for LOC101929297 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000195048 -- 166,237,313(+) G/A/C intron_variant
rs1000451306 -- 166,252,088(+) A/G intron_variant
rs1000606866 -- 166,251,117(+) A/C intron_variant
rs1001025343 -- 166,253,638(+) G/T intron_variant
rs1001058007 -- 166,253,976(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929297 Gene

Variant ID Type Subtype PubMed ID
nsv476791 CNV novel sequence insertion 20440878
nsv478313 CNV novel sequence insertion 20440878
nsv479923 CNV novel sequence insertion 20440878

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929297 Gene

Disorders for LOC101929297 Gene

No disorders were found for LOC101929297 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929297 Gene

Publications for LOC101929297 Gene

No publications were found for LOC101929297 Gene.

No data available for External Links for LOC101929297 Gene

Products for LOC101929297 Gene

Sources for LOC101929297 Gene

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