Aliases for LOC101929294 Gene

Subcategory (RNA class) for LOC101929294 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101929294 Gene

  • Uncharacterized LOC101929294 3
  • NONHSAG049777.2 91
  • HSALNG0064035 164
  • Lnc-NEFL-6 165

External Ids for LOC101929294 Gene

Previous GeneCards Identifiers for LOC101929294 Gene

  • GC08U901697

Summaries for LOC101929294 Gene

GeneCards Summary for LOC101929294 Gene

LOC101929294 (Uncharacterized LOC101929294) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929294 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929294 Gene

Genomics for LOC101929294 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929294 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J024534 Enhancer 0.6 Ensembl ENCODE 0.4 +13.4 13401 0.9 RFX1 POLR2A RAD21 BMI1 ZSCAN5C ENSG00000253643 ENSG00000253535 NEFM LOC101929294 LOC107986932 RF00017-6895 ADAM7
GH08J024383 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.1 +162.2 162190 5.4 SP1 CTCF NFRKB ZNF143 RELA RAD21 TCF12 IKZF2 TRIM22 PKNOX1 ADAMDEC1 ADAM28 ADAM7 piR-57296 LOC101929294 ENSG00000253535
GH08J024509 Enhancer 0.5 ENCODE 0.3 +39.1 39112 0.5 FOXA1 NFE2 JUND FOSL2 BACH1 MAFK ADAM7 ENSG00000253643 LOC101929315 piR-36588-427 LOC101929294 ENSG00000253535 NEFM
GH08J024366 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.1 +179.3 179332 5.8 ATF7 ZNF7 IRF2 SP1 CEBPA EED SOX13 ARID3A DPF2 RUNX3 ADAM28 ENSG00000253535 ADAMDEC1 piR-38351-449 LOC101929294
GH08J024524 Enhancer 0.4 FANTOM5 0.4 +23.7 23728 0.1 CREB1 LOC107986932 LOC101929315 LOC101929294 ADAM7 ENSG00000253535 NEFM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929294 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929294 Gene

Genomic Locations for LOC101929294 Gene
chr8:24,287,156-24,548,618
(GRCh38/hg38)
Size:
261,463 bases
Orientation:
Minus strand

Genomic View for LOC101929294 Gene

Genes around LOC101929294 on UCSC Golden Path with GeneCards custom track
LOC101929294 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101929294 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929294 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929294 Gene

Proteins for LOC101929294 Gene

Post-translational modifications for LOC101929294 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929294 Gene

Domains & Families for LOC101929294 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929294 Gene

Function for LOC101929294 Gene

Phenotypes From GWAS Catalog for LOC101929294 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929294 Gene

Localization for LOC101929294 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929294 Gene

Pathways & Interactions for LOC101929294 Gene

PathCards logo

SuperPathways for LOC101929294 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929294 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929294 Gene

Drugs & Compounds for LOC101929294 Gene

No Compound Related Data Available

Transcripts for LOC101929294 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929294 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4832_9606 lncRNA 887 3

RefSeq: NR_125808,

LNCipedia: lnc-NEFL-6:14,

NONCODE: NONHSAT216859.1,

URS0000D5D5BA_9606 lncRNA 1656 2

LncBook: HSALNT0134297,

LNCipedia: lnc-NEFL-6:10,

URS0000D5901F_9606 lncRNA 865 2

LncBook: HSALNT0134296,

LNCipedia: lnc-NEFL-6:17,

URS0000D58C61_9606 lncRNA 7693 1

LNCipedia: lnc-NEFL-6:15,

URS0000D5D5A1_9606 lncRNA 846 1

LNCipedia: lnc-NEFL-6:16,

LOC101929294 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929294 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929294 Gene

No ASD Table

Relevant External Links for LOC101929294 Gene

GeneLoc Exon Structure for
LOC101929294

Expression for LOC101929294 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929294 Gene

genes like me logo Genes that share expression patterns with LOC101929294: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929294 Gene

Orthologs for LOC101929294 Gene

No data available for Orthologs and Evolution for LOC101929294 Gene

Paralogs for LOC101929294 Gene

No data available for Paralogs for LOC101929294 Gene

Variants for LOC101929294 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101929294 Gene

SNP ID Clinical significance and condition Chr 08 pos Variation AA Info Type
708349 Benign: not provided 24,313,443(-) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
713475 Likely Benign: not provided 24,335,526(-) T/C NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
717905 Benign: not provided 24,392,304(-) T/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT
781120 Benign: not provided 24,393,296(-) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
781121 Benign: not provided 24,394,146(-) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for LOC101929294 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929294 Gene

Variant ID Type Subtype PubMed ID
dgv452n21 CNV loss 19592680
dgv7141n100 CNV loss 25217958
esv1005603 CNV deletion 20482838
esv1347031 CNV insertion 17803354
esv1752768 CNV deletion 17803354
esv2672980 CNV deletion 23128226
esv2673011 CNV deletion 23128226
esv2736765 CNV deletion 23290073
esv2736766 CNV deletion 23290073
esv2736767 CNV deletion 23290073
esv3424387 CNV insertion 20981092
esv3543243 CNV deletion 23714750
esv3572639 CNV loss 25503493
esv3616651 CNV loss 21293372
esv3616652 CNV loss 21293372
esv3616653 CNV loss 21293372
esv3891377 CNV loss 25118596
nsv1076071 CNV deletion 25765185
nsv1137354 CNV deletion 24896259
nsv397333 CNV insertion 16902084
nsv507448 OTHER sequence alteration 20534489
nsv610781 CNV loss 21841781
nsv6120 CNV deletion 18451855
nsv831271 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929294 Gene

Disorders for LOC101929294 Gene

No disorders were found for LOC101929294 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929294 Gene

Publications for LOC101929294 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC101929294 Gene

Products for LOC101929294 Gene

Sources for LOC101929294 Gene