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Aliases for LOC101929279 Gene

Subcategory (RNA class) for LOC101929279 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929279 Gene

  • Uncharacterized LOC101929279 3

External Ids for LOC101929279 Gene

Previous GeneCards Identifiers for LOC101929279 Gene

  • GC10U901778

Summaries for LOC101929279 Gene

GeneCards Summary for LOC101929279 Gene

LOC101929279 (Uncharacterized LOC101929279) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929279 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929279 Gene

Genomics for LOC101929279 Gene

GeneHancer (GH) Regulatory Elements for LOC101929279 Gene

Promoters and enhancers for LOC101929279 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030207 Enhancer 0.5 Ensembl 0.7 -4.0 -3951 1 ZNF341 RUNX3 NR2F1 ZNF664 JCAD LOC101929279 LOC105376477
GH10J030231 Enhancer 0.7 Ensembl ENCODE 0.4 +19.6 19649 1 MAFK ZNF644 CREB1 ZNF316 MAFG FOXA1 EMSY GC10P030218 LOC101929279 GC10P030270
GH10J030214 Enhancer 0.4 Ensembl ENCODE 0.7 +4.2 4206 2.3 JCAD GC10P030218 LOC101929279
GH10J030219 Enhancer 0.6 ENCODE 0.4 +8.7 8710 1.2 PPARG PKNOX1 RXRB ZNF664 MAX POLR2A MYC HLF GC10P030218 LOC101929279 GC10P030270
GH10J030227 Enhancer 0.5 Ensembl 0.4 +15.9 15949 1.2 MAFK ZNF316 MAFG EMSY JCAD GC10P030218 LOC101929279 GC10P030270
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929279 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929279 Gene

Genomic Locations for LOC101929279 Gene
chr10:30,211,852-30,232,690
(GRCh38/hg38)
Size:
20,839 bases
Orientation:
Plus strand

Genomic View for LOC101929279 Gene

Genes around LOC101929279 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929279 Gene

Proteins for LOC101929279 Gene

Post-translational modifications for LOC101929279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929279 Gene

Domains & Families for LOC101929279 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929279 Gene

Function for LOC101929279 Gene

Phenotypes From GWAS Catalog for LOC101929279 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929279 Gene

Localization for LOC101929279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929279 Gene

Pathways & Interactions for LOC101929279 Gene

PathCards logo

SuperPathways for LOC101929279 Gene

No Data Available

Interacting Proteins for LOC101929279 Gene

Gene Ontology (GO) - Biological Process for LOC101929279 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929279 Gene

Drugs & Compounds for LOC101929279 Gene

No Compound Related Data Available

Transcripts for LOC101929279 Gene

mRNA/cDNA for LOC101929279 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929279 Gene

No ASD Table

Relevant External Links for LOC101929279 Gene

GeneLoc Exon Structure for
LOC101929279

Expression for LOC101929279 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929279 Gene

Orthologs for LOC101929279 Gene

No data available for Orthologs and Evolution for LOC101929279 Gene

Paralogs for LOC101929279 Gene

No data available for Paralogs for LOC101929279 Gene

Variants for LOC101929279 Gene

Sequence variations from dbSNP and Humsavar for LOC101929279 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000148421 -- 30,229,691(+) G/A/T intron_variant
rs1000266975 -- 30,214,498(+) T/C intron_variant
rs1000278379 -- 30,216,466(+) C/A intron_variant
rs1000482393 -- 30,225,426(+) C/A/T intron_variant
rs1000563350 -- 30,219,475(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929279 Gene

Variant ID Type Subtype PubMed ID
esv27172 CNV loss 19812545
nsv1129323 OTHER inversion 24896259
nsv1161936 CNV duplication 26073780
nsv831820 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929279 Gene

Disorders for LOC101929279 Gene

No disorders were found for LOC101929279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929279 Gene

Publications for LOC101929279 Gene

  1. Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis. (PMID: 23143602) Whitcomb DC … Devlin B (Nature genetics 2012) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC101929279 Gene

Products for LOC101929279 Gene

Sources for LOC101929279 Gene

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