Aliases for LOC101929269 Gene

Data sources for LOC101929269 Gene:

RNA type for LOC101929269 Gene

ncRNA

Aliases for LOC101929269 Gene

External Ids for LOC101929269 Gene

Previous GeneCards Identifiers for LOC101929269 Gene

  • GC08U901824
  • GC08M010921

Summaries for LOC101929269 Gene

GeneCards Summary for LOC101929269 Gene

LOC101929269 (Uncharacterized LOC101929269) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929269 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929269 Gene

Genomics for LOC101929269 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929269 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011063 Promoter/Enhancer 1.1 Ensembl ENCODE 250.7 +1.4 1426 4.2 ZNF600 ATF2 ZIC2 ZNF513 RFX5 NFE2 PRDM6 ZBTB48 ZNF2 PKNOX1 LOC101929269 ENSG00000255310 ENSG00000269954 ENSG00000254936 ENSG00000269918 HSALNG0063408 XKR6 PINX1
GH08J011279 Enhancer 0.5 ENCODE 10.3 -212.6 -212618 0.2 ZNF654 REST CTCF RAD21 SMC3 ENSG00000254936 LOC101929269 ENSG00000249316 LINC00529 MTMR9 lnc-XKR6-2 piR-42694-159 TDH-AS1 XKR6
GH08J011113 Enhancer 0.5 Ensembl 10.2 -47.0 -47012 1 MAX TAF1 SPI1 ZNF687 RUNX3 HSALNG0063413 LOC101929269 ENSG00000255310 XKR6 PINX1
GH08J011162 Enhancer 0.5 Ensembl 9.7 -97.1 -97112 1.6 ZNF24 SPI1 POLR2A RUNX3 ETV6 lnc-FAM167A-5 ENSG00000255310 XKR6 ENSG00000254936 LOC101929269 ENSG00000269918 RPL17P29 PINX1
GH08J011163 Enhancer 0.3 Ensembl 9.7 -95.4 -95412 0.6 ATF2 lnc-FAM167A-5 ENSG00000254936 ENSG00000255310 LOC101929269 RPL17P29 XKR6 PINX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929269 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929269 Gene

Latest Assembly
chr8:11,062,646-11,067,089
(GRCh38/hg38)
Size:
4,444 bases
Orientation:
Minus strand

Previous Assembly
chr8:10,920,162-10,924,599
(GRCh37/hg19 by Entrez Gene)
Size:
4,438 bases
Orientation:
Minus strand

chr8:10,920,157-10,924,599
(GRCh37/hg19 by Ensembl)
Size:
4,443 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):2,279,931-2,284,374 (+)

Genomic View for LOC101929269 Gene

Genes around LOC101929269 on UCSC Golden Path with GeneCards custom track
LOC101929269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929269 Gene

Proteins for LOC101929269 Gene

Post-translational modifications for LOC101929269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929269 Gene

Domains & Families for LOC101929269 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929269 Gene

Function for LOC101929269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929269 Gene

Localization for LOC101929269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929269 Gene

Pathways & Interactions for LOC101929269 Gene

PathCards logo

SuperPathways for LOC101929269 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929269 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929269 Gene

Drugs & Compounds for LOC101929269 Gene

No Compound Related Data Available

Transcripts for LOC101929269 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929269 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005166D0_9606 lncRNA 639 4

Ensembl: ENST00000532453 (view in UCSC) ,

LncBook: HSALNT0133033,

LNCipedia: lnc-PINX1-6:3,

NONCODE: NONHSAT125032.2,

URS0001BEE1FE_9606 lncRNA 639 1

LncBook: HSALNT0133033,

URS0000D5BDFC_9606 lncRNA 636 1

LNCipedia: lnc-PINX1-6:2,

LOC101929269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929269 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929269 Gene

No ASD Table

Relevant External Links for LOC101929269 Gene

GeneLoc Exon Structure for
LOC101929269

Expression for LOC101929269 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929269 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101929269 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.2), Brain - Cerebellum (x6.4), Pituitary (x5.8), and Brain - Hypothalamus (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929269

genes like me logo Genes that share expression patterns with LOC101929269: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929269 Gene

Orthologs for LOC101929269 Gene

Evolution for LOC101929269 Gene

ENSEMBL:
Gene Tree for LOC101929269 (if available)
TreeFam:
Gene Tree for LOC101929269 (if available)

No data available for Orthologs for LOC101929269 Gene

Paralogs for LOC101929269 Gene

No data available for Paralogs for LOC101929269 Gene

Variants for LOC101929269 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929269 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929269 Gene

Disorders for LOC101929269 Gene

No disorders were found for LOC101929269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929269 Gene

Publications for LOC101929269 Gene

No publications were found for LOC101929269 Gene.

No data available for Mastermind for LOC101929269 Gene

Products for LOC101929269 Gene

Sources for LOC101929269 Gene