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Aliases for LOC101929268 Gene

Subcategory (RNA class) for LOC101929268 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929268 Gene

  • Uncharacterized LOC101929268 3
  • Novel Transcript 5
  • AC022915.2 5

External Ids for LOC101929268 Gene

Previous GeneCards Identifiers for LOC101929268 Gene

  • GC08U901768

Summaries for LOC101929268 Gene

GeneCards Summary for LOC101929268 Gene

LOC101929268 (Uncharacterized LOC101929268) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929268 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929268 Gene

Genomics for LOC101929268 Gene

GeneHancer (GH) Regulatory Elements for LOC101929268 Gene

Promoters and enhancers for LOC101929268 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J048549 Enhancer 0.9 Ensembl ENCODE dbSUPER 607.3 -0.6 -588 2 CREM RUNX3 JUNB BATF ATF2 ATF7 LOC101929268 ENSG00000253688 GC08M048519 PIR49020
GH08J048615 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 18.9 +67.6 67589 6.7 NCOA3 MAFK CREB1 CTBP1 ZNF316 CEBPB RFX1 ZKSCAN1 ESRRA MAFG LOC101929217 LINC02847 ENSG00000253455 LOC101929268 LINC02599
GH08J048513 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 22.5 -36.8 -36835 3.2 ZFX ZNF148 ZNF687 MAFK SP7 POLR2A KLF14 CREM PRDM1 EGR1 LOC101929268 SNAI2 LOC105375822 ENSG00000253140 ENSG00000279881
GH08J048500 Enhancer 1.1 Ensembl ENCODE dbSUPER 21.4 -48.8 -48766 5.2 CEBPG FOSL2 CREB1 PKNOX1 ZIC2 CEBPA CEBPB SP1 RCOR1 RFX1 LOC101929268 ENSG00000253140 ENSG00000279881
GH08J048517 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 19.7 -33.2 -33166 1.2 ZNF143 IKZF2 ELF1 CTCF SMAD5 PIR49020 ENSG00000253140 LOC105375822 GC08M048519 LOC101929268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929268 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929268 Gene

Genomic Locations for LOC101929268 Gene
chr8:48,551,567-48,698,510
(GRCh38/hg38)
Size:
146,944 bases
Orientation:
Plus strand
chr8:49,464,127-49,611,069
(GRCh37/hg19)
Size:
146,943 bases
Orientation:
Plus strand

Genomic View for LOC101929268 Gene

Genes around LOC101929268 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929268 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929268 Gene

Proteins for LOC101929268 Gene

Post-translational modifications for LOC101929268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929268 Gene

Domains & Families for LOC101929268 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929268 Gene

Function for LOC101929268 Gene

Phenotypes From GWAS Catalog for LOC101929268 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929268 Gene

Localization for LOC101929268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929268 Gene

Pathways & Interactions for LOC101929268 Gene

PathCards logo

SuperPathways for LOC101929268 Gene

No Data Available

Interacting Proteins for LOC101929268 Gene

Gene Ontology (GO) - Biological Process for LOC101929268 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929268 Gene

Drugs & Compounds for LOC101929268 Gene

No Compound Related Data Available

Transcripts for LOC101929268 Gene

mRNA/cDNA for LOC101929268 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929268 Gene

No ASD Table

Relevant External Links for LOC101929268 Gene

GeneLoc Exon Structure for
LOC101929268

Expression for LOC101929268 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929268 Gene

Orthologs for LOC101929268 Gene

Evolution for LOC101929268 Gene

ENSEMBL:
Gene Tree for LOC101929268 (if available)
TreeFam:
Gene Tree for LOC101929268 (if available)

No data available for Orthologs for LOC101929268 Gene

Paralogs for LOC101929268 Gene

No data available for Paralogs for LOC101929268 Gene

Variants for LOC101929268 Gene

Sequence variations from dbSNP and Humsavar for LOC101929268 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000038841 -- 48,647,134(+) C/G intron_variant
rs1000069401 -- 48,552,752(+) G/T intron_variant
rs1000071923 -- 48,595,919(+) G/A intron_variant
rs1000127899 -- 48,571,345(+) G/T intron_variant
rs1000129632 -- 48,678,938(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929268 Gene

Variant ID Type Subtype PubMed ID
nsv1140905 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929268 Gene

Disorders for LOC101929268 Gene

No disorders were found for LOC101929268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929268 Gene

Publications for LOC101929268 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC101929268 Gene

Products for LOC101929268 Gene

Sources for LOC101929268 Gene

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