Aliases for LOC101929227 Gene

Data sources for LOC101929227 Gene:

RNA type for LOC101929227 Gene

lncRNA

Aliases for LOC101929227 Gene

External Ids for LOC101929227 Gene

Previous GeneCards Identifiers for LOC101929227 Gene

  • GC11U902082
  • GC11M120741

Summaries for LOC101929227 Gene

GeneCards Summary for LOC101929227 Gene

LOC101929227 (Uncharacterized LOC101929227) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929227 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929227 Gene

Genomics for LOC101929227 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J120893 Enhancer 0.5 Ensembl 250.7 +0.9 896 1.8 CEBPA ZIC2 HNF4A ATF2 CEBPG HNF1A HLF EGR2 LOC101929227 HSALNG0087716 TBCEL GRIK4
GH11J120926 Enhancer 0.8 ENCODE 12.2 -31.4 -31350 0.2 BCLAF1 SP1 BCL11A TRIM22 IRF4 EBF1 CBFB BHLHE40 BATF ELF1 LOC101929227 TECTA HSALNG0087717 TBCEL GRIK4
GH11J120930 Enhancer 0.8 Ensembl ENCODE 11.7 -34.5 -34544 1.1 ZNF654 CTCF TRIM22 SIN3A SMC3 RAD21 ZFP69B EGR2 ZNF692 ZNF143 LOC101929227 GRIK4 TECTA HSALNG0087717 TBCEL
GH11J121090 Enhancer 0.9 Ensembl ENCODE 9.5 -196.9 -196904 1.8 CEBPA ATF3 YY1 FOXA2 RXRA ZBTB33 JUND SPI1 MYC MAX LOC101929227 TECTA HSALNG0087722 TBCEL-TECTA
GH11J120869 Enhancer 0.5 ENCODE 11.4 +25.2 25170 0.2 EBF1 IKZF1 IKZF2 TCF12 DPF2 ARNT LOC101929227 HSALNG0087716 TBCEL GRIK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929227 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929227 Gene

Latest Assembly
chr11:120,867,932-120,894,797
(GRCh38/hg38)
Size:
26,866 bases
Orientation:
Minus strand

Previous Assembly
chr11:120,738,642-120,765,506
(GRCh37/hg19 by Entrez Gene)
Size:
26,865 bases
Orientation:
Minus strand

chr11:120,738,642-120,765,506
(GRCh37/hg19 by Ensembl)
Size:
26,865 bases
Orientation:
Minus strand

Genomic View for LOC101929227 Gene

Genes around LOC101929227 on UCSC Golden Path with GeneCards custom track
LOC101929227 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929227 Gene

Proteins for LOC101929227 Gene

Post-translational modifications for LOC101929227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929227 Gene

Domains & Families for LOC101929227 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929227 Gene

Function for LOC101929227 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929227 Gene

Localization for LOC101929227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929227 Gene

Pathways & Interactions for LOC101929227 Gene

PathCards logo

SuperPathways for LOC101929227 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929227 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929227 Gene

Drugs & Compounds for LOC101929227 Gene

No Compound Related Data Available

Transcripts for LOC101929227 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929227 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005A13A1_9606 lncRNA 6316 3

Ensembl: ENST00000505153 (view in UCSC) ,

LNCipedia: lnc-TRIM29-10:1,

NONCODE: NONHSAT024733.2,

URS00008E3A3D_9606 lncRNA 6314 1

RefSeq: NR_132790,

LOC101929227 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929227 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929227 Gene

No ASD Table

Relevant External Links for LOC101929227 Gene

GeneLoc Exon Structure for
LOC101929227

Expression for LOC101929227 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929227 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101929227 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x7.9), Esophagus - Mucosa (x5.8), and Brain - Putamen (basal ganglia) (x4.7).
genes like me logo Genes that share expression patterns with LOC101929227: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929227 Gene

Orthologs for LOC101929227 Gene

Evolution for LOC101929227 Gene

ENSEMBL:
Gene Tree for LOC101929227 (if available)
TreeFam:
Gene Tree for LOC101929227 (if available)

No data available for Orthologs for LOC101929227 Gene

Paralogs for LOC101929227 Gene

No data available for Paralogs for LOC101929227 Gene

Variants for LOC101929227 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101929227 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs113969837 Benign: not provided 120,875,201(-) C/T
NM_014619.5(GRIK4):c.1122C>T (p.Tyr374=)
SYNONYMOUS
rs117994876 Benign: not provided 120,874,188(-) C/T
NM_014619.5(GRIK4):c.1029C>T (p.His343=)
SYNONYMOUS
rs151091579 Uncertain Significance: not provided 120,874,214(-) G/T
NM_014619.5(GRIK4):c.1055G>T (p.Arg352Leu)
MISSENSE
rs368653765 Likely Benign: not provided 120,874,143(-) C/T
NM_014619.5(GRIK4):c.984C>T (p.Ile328=)
SYNONYMOUS
rs373447952 Likely Benign: not provided 120,874,074(-) G/A
NM_014619.5(GRIK4):c.915G>A (p.Ser305=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929227 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929227 Gene

Disorders for LOC101929227 Gene

No disorders were found for LOC101929227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929227 Gene

Publications for LOC101929227 Gene

No publications were found for LOC101929227 Gene.

No data available for Mastermind for LOC101929227 Gene

Products for LOC101929227 Gene

Sources for LOC101929227 Gene