Aliases for LOC101929208 Gene

Data sources for LOC101929208 Gene:

RNA type for LOC101929208 Gene

lncRNA

Aliases for LOC101929208 Gene

External Ids for LOC101929208 Gene

Previous GeneCards Identifiers for LOC101929208 Gene

  • GC11U902020

Summaries for LOC101929208 Gene

GeneCards Summary for LOC101929208 Gene

LOC101929208 (Uncharacterized LOC101929208) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929208 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929208 Gene

Genomics for LOC101929208 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929208 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J120956 Enhancer 0.6 Ensembl ENCODE 250.7 +0.8 823 1.6 ETS1 SP1 GABPB1 LOC101929208 TECTA HMGB1P42 TBCEL GRIK4
GH11J120952 Enhancer 0.7 ENCODE 0.4 +5.0 5006 1.5 ZNF654 TARDBP TRIM22 CTCF SIN3A ELF1 RAD21 SMC3 YY1 EBF1 LOC101929208 HMGB1P42 TBCEL GRIK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929208 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929208 Gene

Latest Assembly
chr11:120,940,523-120,958,223
(GRCh38/hg38)
Size:
17,701 bases
Orientation:
Minus strand

Previous Assembly
chr11:120,811,263-120,828,748
(GRCh37/hg19 by Entrez Gene)
Size:
17,486 bases
Orientation:
Minus strand

Genomic View for LOC101929208 Gene

Genes around LOC101929208 on UCSC Golden Path with GeneCards custom track
LOC101929208 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929208 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929208 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929208 Gene

Proteins for LOC101929208 Gene

Post-translational modifications for LOC101929208 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929208 Gene

Domains & Families for LOC101929208 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929208 Gene

Function for LOC101929208 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929208 Gene

Localization for LOC101929208 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929208 Gene

Pathways & Interactions for LOC101929208 Gene

PathCards logo

SuperPathways for LOC101929208 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929208 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929208 Gene

Drugs & Compounds for LOC101929208 Gene

No Compound Related Data Available

Transcripts for LOC101929208 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929208 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008E39C2_9606 lncRNA 511 1

RefSeq: NR_133004,

URS00008BC990_9606 lncRNA 457 3

LncBook: HSALNT0182238,

LNCipedia: lnc-TRIM29-8:3,

NONCODE: NONHSAT024735.2,

URS00009BB40E_9606 lncRNA 394 2

LncBook: HSALNT0182239,

NONCODE: NONHSAT160829.1,

URS00008BF21B_9606 lncRNA 2910 1

LNCipedia: lnc-TRIM29-8:1,

URS0000D56CE3_9606 lncRNA 512 1

LNCipedia: lnc-TRIM29-8:2,

LOC101929208 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929208 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929208 Gene

No ASD Table

Relevant External Links for LOC101929208 Gene

GeneLoc Exon Structure for
LOC101929208

Expression for LOC101929208 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929208 Gene

Orthologs for LOC101929208 Gene

No data available for Orthologs and Evolution for LOC101929208 Gene

Paralogs for LOC101929208 Gene

No data available for Paralogs for LOC101929208 Gene

Variants for LOC101929208 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101929208 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs534517447 Likely Pathogenic: not provided 120,956,935(-) G/A
NM_014619.4(GRIK4):c.1856G>A (p.Arg619His)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929208 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929208 Gene

Disorders for LOC101929208 Gene

No disorders were found for LOC101929208 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929208 Gene

Publications for LOC101929208 Gene

No publications were found for LOC101929208 Gene.

No data available for Mastermind for LOC101929208 Gene

Products for LOC101929208 Gene

Sources for LOC101929208 Gene