Aliases for LOC101929162 Gene

Subcategory (RNA class) for LOC101929162 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC101929162 Gene

  • Uncharacterized LOC101929162 3
  • Novel Transcript, Antisense To PRDM4 5
  • NONHSAG012191 94
  • HSALNG0093787 169
  • AC007622.2 5
  • Lnc-PWP1-1 170

External Ids for LOC101929162 Gene

Previous GeneCards Identifiers for LOC101929162 Gene

  • GC12U901766

Summaries for LOC101929162 Gene

GeneCards Summary for LOC101929162 Gene

LOC101929162 (Uncharacterized LOC101929162) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929162 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929162 Gene

Genomics for LOC101929162 Gene

GeneHancer (GH) Regulatory Elements for LOC101929162 Gene

Promoters and enhancers for LOC101929162 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929162 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929162 Gene

Genomic Locations for LOC101929162 Gene
chr12:107,736,555-107,759,968
(GRCh38/hg38)
Size:
23,414 bases
Orientation:
Plus strand
chr12:108,130,332-108,153,745
(GRCh37/hg19)
Size:
23,414 bases
Orientation:
Plus strand

Genomic View for LOC101929162 Gene

Genes around LOC101929162 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929162 Gene

Proteins for LOC101929162 Gene

Post-translational modifications for LOC101929162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929162 Gene

Domains & Families for LOC101929162 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929162 Gene

Function for LOC101929162 Gene

Phenotypes From GWAS Catalog for LOC101929162 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929162 Gene

Localization for LOC101929162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929162 Gene

Pathways & Interactions for LOC101929162 Gene

PathCards logo

SuperPathways for LOC101929162 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929162 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929162 Gene

Drugs & Compounds for LOC101929162 Gene

No Compound Related Data Available

Transcripts for LOC101929162 Gene

mRNA/cDNA for LOC101929162 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929162 Gene

No ASD Table

Relevant External Links for LOC101929162 Gene

GeneLoc Exon Structure for
LOC101929162

Expression for LOC101929162 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929162 Gene

genes like me logo Genes that share expression patterns with LOC101929162: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929162 Gene

Orthologs for LOC101929162 Gene

Evolution for LOC101929162 Gene

ENSEMBL:
Gene Tree for LOC101929162 (if available)
TreeFam:
Gene Tree for LOC101929162 (if available)

No data available for Orthologs for LOC101929162 Gene

Paralogs for LOC101929162 Gene

No data available for Paralogs for LOC101929162 Gene

Variants for LOC101929162 Gene

Sequence variations from dbSNP and Humsavar for LOC101929162 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000117037 -- 107,735,727(+) C/T upstream_transcript_variant
rs1000172933 -- 107,747,928(+) C/T intron_variant
rs1000187788 -- 107,740,382(+) G/A intron_variant
rs1000251953 -- 107,758,327(+) T/G non_coding_transcript_variant
rs1000349061 -- 107,753,748(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929162 Gene

Variant ID Type Subtype PubMed ID
nsv1038935 CNV gain 25217958
nsv560091 CNV gain 21841781
nsv820093 CNV loss 19587683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929162 Gene

Disorders for LOC101929162 Gene

No disorders were found for LOC101929162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929162 Gene

Publications for LOC101929162 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC101929162 Gene

Products for LOC101929162 Gene

Sources for LOC101929162 Gene