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Aliases for LOC101929162 Gene

Subcategory (RNA class) for LOC101929162 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101929162 Gene

  • Uncharacterized LOC101929162 3
  • Novel Transcript, Antisense To PRDM4 5
  • AC007622.2 5

External Ids for LOC101929162 Gene

Previous GeneCards Identifiers for LOC101929162 Gene

  • GC12U901766

Summaries for LOC101929162 Gene

GeneCards Summary for LOC101929162 Gene

LOC101929162 (Uncharacterized LOC101929162) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929162 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929162 Gene

Genomics for LOC101929162 Gene

GeneHancer (GH) Regulatory Elements for LOC101929162 Gene

Promoters and enhancers for LOC101929162 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J107735 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 +0.5 518 2.5 ZNF687 CREM RAD21 PKNOX1 TRIM22 HDAC1 CTBP1 ELF1 IRF4 ZNF207 LOC101929162 PWP1 PRDM4 GC12M107739
GH12J108726 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.8 +994.6 994550 9.3 HDGF ZNF473 CC2D1A SP1 ZFX ELF3 MNT CBFA2T2 ZNF148 NKRF CORO1C LOC101929162 RNU4-32P RNU7-169P SSH1 SELPLG PRDM4 ENSG00000257221 ACACB FOXN4
GH12J108687 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 25.3 +956.7 956711 10.7 ZFX SP1 ZNF652 CC2D1A CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 GTF2F1 CORO1C SART3 LOC101929162 ALKBH2 UBE3B PRDM4 RNU7-169P RNU4-32P KCTD10 ENSG00000257221
GH12J108626 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.2 +896.9 896891 13.4 SP1 CC2D1A ZFX ELF3 ZKSCAN8 CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 SELPLG GC12P108633 SART3 PWP1 PRDM4 UBE3B CORO1C FICD LOC101929162 TMEM119
GH12J108514 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.1 +779.0 778965 2.6 CC2D1A SP1 ELF3 ZKSCAN8 NKRF POLR2A ZNF121 FOS SP7 ELF1 FICD SART3 PWP1 KCTD10 LOC101929162 PRDM4 ALKBH2 UBE3B ISCU PIR52944
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929162 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929162 Gene

Genomic Locations for LOC101929162 Gene
chr12:107,736,555-107,759,968
(GRCh38/hg38)
Size:
23,414 bases
Orientation:
Plus strand
chr12:108,130,332-108,153,745
(GRCh37/hg19)
Size:
23,414 bases
Orientation:
Plus strand

Genomic View for LOC101929162 Gene

Genes around LOC101929162 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929162 Gene

Proteins for LOC101929162 Gene

Post-translational modifications for LOC101929162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929162 Gene

Domains & Families for LOC101929162 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929162 Gene

Function for LOC101929162 Gene

Phenotypes From GWAS Catalog for LOC101929162 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929162 Gene

Localization for LOC101929162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929162 Gene

Pathways & Interactions for LOC101929162 Gene

PathCards logo

SuperPathways for LOC101929162 Gene

No Data Available

Interacting Proteins for LOC101929162 Gene

Gene Ontology (GO) - Biological Process for LOC101929162 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929162 Gene

Drugs & Compounds for LOC101929162 Gene

No Compound Related Data Available

Transcripts for LOC101929162 Gene

mRNA/cDNA for LOC101929162 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929162 Gene

No ASD Table

Relevant External Links for LOC101929162 Gene

GeneLoc Exon Structure for
LOC101929162

Expression for LOC101929162 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929162 Gene

Orthologs for LOC101929162 Gene

Evolution for LOC101929162 Gene

ENSEMBL:
Gene Tree for LOC101929162 (if available)
TreeFam:
Gene Tree for LOC101929162 (if available)

No data available for Orthologs for LOC101929162 Gene

Paralogs for LOC101929162 Gene

No data available for Paralogs for LOC101929162 Gene

Variants for LOC101929162 Gene

Sequence variations from dbSNP and Humsavar for LOC101929162 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000117037 -- 107,735,727(+) C/T upstream_transcript_variant
rs1000172933 -- 107,747,928(+) C/T intron_variant
rs1000187788 -- 107,740,382(+) G/A intron_variant
rs1000251953 -- 107,758,327(+) T/G non_coding_transcript_variant
rs1000349061 -- 107,753,748(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929162 Gene

Variant ID Type Subtype PubMed ID
nsv1038935 CNV gain 25217958
nsv560091 CNV gain 21841781
nsv820093 CNV loss 19587683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929162 Gene

Disorders for LOC101929162 Gene

No disorders were found for LOC101929162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929162 Gene

Publications for LOC101929162 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC101929162 Gene

Products for LOC101929162 Gene

Sources for LOC101929162 Gene

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