Aliases for LOC101929162 Gene

Subcategory (RNA class) for LOC101929162 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101929162 Gene

  • Uncharacterized LOC101929162 3
  • Novel Transcript, Antisense To PRDM4 5
  • NONHSAG012191.2 91
  • HSALNG0093787 164
  • AC007622.2 5
  • Lnc-PWP1-1 165

External Ids for LOC101929162 Gene

Previous GeneCards Identifiers for LOC101929162 Gene

  • GC12U901766

Summaries for LOC101929162 Gene

GeneCards Summary for LOC101929162 Gene

LOC101929162 (Uncharacterized LOC101929162) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929162 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929162 Gene

Genomics for LOC101929162 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929162 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929162 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929162 Gene

Genomic Locations for LOC101929162 Gene
chr12:107,736,555-107,759,968
(GRCh38/hg38)
Size:
23,414 bases
Orientation:
Plus strand
chr12:108,130,332-108,153,745
(GRCh37/hg19)
Size:
23,414 bases
Orientation:
Plus strand

Genomic View for LOC101929162 Gene

Genes around LOC101929162 on UCSC Golden Path with GeneCards custom track
LOC101929162 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101929162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929162 Gene

Proteins for LOC101929162 Gene

Post-translational modifications for LOC101929162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929162 Gene

Domains & Families for LOC101929162 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929162 Gene

Function for LOC101929162 Gene

Phenotypes From GWAS Catalog for LOC101929162 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929162 Gene

Localization for LOC101929162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929162 Gene

Pathways & Interactions for LOC101929162 Gene

PathCards logo

SuperPathways for LOC101929162 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929162 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929162 Gene

Drugs & Compounds for LOC101929162 Gene

No Compound Related Data Available

Transcripts for LOC101929162 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929162 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C3E71_9606 lncRNA 1680 2

Ensembl: ENST00000546714 (view in UCSC) ,

NONCODE: NONHSAT030509.2,

URS0000759A13_9606 lncRNA 1714 1

RefSeq: NR_120474,

URS0000EEF76B_9606 lncRNA 1343 1

Ensembl: ENST00000546829 (view in UCSC) ,

URS0000440493_9606 lncRNA 567 3

LncBook: HSALNT0194498,

LNCipedia: lnc-PWP1-1:4,

NONCODE: NONHSAT030508.2,

LOC101929162 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929162 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929162 Gene

No ASD Table

Relevant External Links for LOC101929162 Gene

GeneLoc Exon Structure for
LOC101929162

Expression for LOC101929162 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929162 Gene

genes like me logo Genes that share expression patterns with LOC101929162: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929162 Gene

Orthologs for LOC101929162 Gene

Evolution for LOC101929162 Gene

ENSEMBL:
Gene Tree for LOC101929162 (if available)
TreeFam:
Gene Tree for LOC101929162 (if available)

No data available for Orthologs for LOC101929162 Gene

Paralogs for LOC101929162 Gene

No data available for Paralogs for LOC101929162 Gene

Variants for LOC101929162 Gene

Additional dbSNP identifiers (rs#s) for LOC101929162 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929162 Gene

Variant ID Type Subtype PubMed ID
nsv1038935 CNV gain 25217958
nsv560091 CNV gain 21841781
nsv820093 CNV loss 19587683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929162 Gene

Disorders for LOC101929162 Gene

No disorders were found for LOC101929162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929162 Gene

Publications for LOC101929162 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101929162 Gene

Products for LOC101929162 Gene

Sources for LOC101929162 Gene