Aliases for LOC101929154 Gene

Subcategory (RNA class) for LOC101929154 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101929154 Gene

  • Uncharacterized LOC101929154 3
  • NONHSAG040796 92
  • HSALNG0042855 167
  • Lnc-SCAMP1-2 168

External Ids for LOC101929154 Gene

Previous GeneCards Identifiers for LOC101929154 Gene

  • GC05U901746

Summaries for LOC101929154 Gene

GeneCards Summary for LOC101929154 Gene

LOC101929154 (Uncharacterized LOC101929154) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929154 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929154 Gene

Genomics for LOC101929154 Gene

GeneHancer (GH) Regulatory Elements for LOC101929154 Gene

Promoters and enhancers for LOC101929154 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J077882 Enhancer 0.8 ENCODE dbSUPER 500.7 -1.9 -1930 1.1 FOS CEBPG NR3C1 EBF1 ATF4 GATA2 CEBPB JUN BHLHE40 ZNF366 LOC101929154 piR-60664-005 lnc-TBCA-2 lnc-PDE8B-1
GH05J077884 Enhancer 0.2 Ensembl 500.7 +0.4 445 1 LOC101929154 piR-60664-005 lnc-PDE8B-7
GH05J077892 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +8.7 8745 2.4 JUND FOS POLR2A REST JUN NFRKB ZNF316 ZBTB17 MAFF FOSL1 LOC101929154 lnc-SCAMP1-8 lnc-TBCA-4
GH05J077946 Enhancer 1.1 UCNEbase Ensembl dbSUPER 0.2 +62.0 61984 0.5 ZSCAN5C CTCF OSR2 WT1 ZBTB17 ZBTB1 GATA3 FOXA1 RCOR1 PRDM6 ENSG00000253572 TBCA piR-35674-420 LOC101929154
GH05J077905 Enhancer 0.6 dbSUPER 0.4 +21.8 21780 1.9 FOS ZNF316 CTCF CEBPG NFE2 FOSL1 MAFG RAD21 ZEB2 CEBPB piR-42491-175 TBCA lnc-SCAMP1-8 LOC101929154
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929154 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929154 Gene

Genomic Locations for LOC101929154 Gene
chr5:77,884,656-77,959,101
(GRCh38/hg38)
Size:
74,446 bases
Orientation:
Plus strand

Genomic View for LOC101929154 Gene

Genes around LOC101929154 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929154 Gene

Proteins for LOC101929154 Gene

Post-translational modifications for LOC101929154 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929154 Gene

Domains & Families for LOC101929154 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929154 Gene

Function for LOC101929154 Gene

Phenotypes From GWAS Catalog for LOC101929154 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929154 Gene

Localization for LOC101929154 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929154 Gene

Pathways & Interactions for LOC101929154 Gene

PathCards logo

SuperPathways for LOC101929154 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101929154 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929154 Gene

Drugs & Compounds for LOC101929154 Gene

No Compound Related Data Available

Transcripts for LOC101929154 Gene

mRNA/cDNA for LOC101929154 Gene

5 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929154 Gene

No ASD Table

Relevant External Links for LOC101929154 Gene

GeneLoc Exon Structure for
LOC101929154

Expression for LOC101929154 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929154

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929154 Gene

Orthologs for LOC101929154 Gene

No data available for Orthologs and Evolution for LOC101929154 Gene

Paralogs for LOC101929154 Gene

No data available for Paralogs for LOC101929154 Gene

Variants for LOC101929154 Gene

Additional dbSNP identifiers (rs#s) for LOC101929154 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929154 Gene

Variant ID Type Subtype PubMed ID
esv2660618 CNV deletion 23128226
esv3605500 CNV loss 21293372
esv3605501 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929154 Gene

Disorders for LOC101929154 Gene

No disorders were found for LOC101929154 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929154 Gene

Publications for LOC101929154 Gene

No publications were found for LOC101929154 Gene.

No data available for Mastermind for LOC101929154 Gene

Products for LOC101929154 Gene

Sources for LOC101929154 Gene