Aliases for LOC101929122 Gene

Subcategory (RNA class) for LOC101929122 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC101929122 Gene

  • Uncharacterized LOC101929122 3
  • Novel Transcript, Antisense To FNDC1 5
  • Lnc-TAGAP-4 168
  • AL356417.2 5

External Ids for LOC101929122 Gene

Previous GeneCards Identifiers for LOC101929122 Gene

  • GC06U902438

Summaries for LOC101929122 Gene

GeneCards Summary for LOC101929122 Gene

LOC101929122 (Uncharacterized LOC101929122) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929122 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929122 Gene

Genomics for LOC101929122 Gene

GeneHancer (GH) Regulatory Elements for LOC101929122 Gene

Promoters and enhancers for LOC101929122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J159169 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.6 -601 3.3 CTCF ZIC2 ZBTB26 EZH2 ZEB1 ZNF341 ZBTB17 ZNF263 ZFHX2 ZNF777 FNDC1 LOC101929122 FNDC1-IT1
GH06J159202 Enhancer 0.6 Ensembl ENCODE 11.7 -33.9 -33869 2.6 BHLHE40 FOS ELF1 CEBPB FNDC1 LOC101929122 FNDC1-IT1
GH06J158758 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.1 +408.9 408878 9.1 RXRA RBAK PHB2 ZIC2 ZBTB11 AFF1 TARDBP REST HES1 TOE1 EZR ENSG00000213076 RNU6-293P LOC101929122 ENSG00000229502 TMEM181 MIR3918 AMZ2P2 SYTL3
GH06J159463 Enhancer 0.4 ENCODE dbSUPER 13.1 -294.7 -294698 1.7 CTCF LOC101929142 lnc-FNDC1-5 LOC101929122 FNDC1 lnc-SOD2-8
GH06J159430 Enhancer 0.6 ENCODE dbSUPER 8.6 -260.2 -260238 1.4 RXRA HNF4A SP1 LOC101929122 HSALNG0054736 piR-53549
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929122 Gene

Genomic Locations for LOC101929122 Gene
chr6:159,165,756-159,170,032
(GRCh38/hg38)
Size:
4,277 bases
Orientation:
Minus strand
chr6:159,586,941-159,591,039
(GRCh37/hg19)
Size:
4,099 bases
Orientation:
Minus strand

Genomic View for LOC101929122 Gene

Genes around LOC101929122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929122 Gene

Proteins for LOC101929122 Gene

Post-translational modifications for LOC101929122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929122 Gene

Domains & Families for LOC101929122 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929122 Gene

Function for LOC101929122 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929122 Gene

Localization for LOC101929122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929122 Gene

Pathways & Interactions for LOC101929122 Gene

PathCards logo

SuperPathways for LOC101929122 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101929122 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929122 Gene

Drugs & Compounds for LOC101929122 Gene

No Compound Related Data Available

Transcripts for LOC101929122 Gene

mRNA/cDNA for LOC101929122 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929122 Gene

No ASD Table

Relevant External Links for LOC101929122 Gene

GeneLoc Exon Structure for
LOC101929122

Expression for LOC101929122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929122 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101929122

genes like me logo Genes that share expression patterns with LOC101929122: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929122 Gene

Orthologs for LOC101929122 Gene

Evolution for LOC101929122 Gene

ENSEMBL:
Gene Tree for LOC101929122 (if available)
TreeFam:
Gene Tree for LOC101929122 (if available)

No data available for Orthologs for LOC101929122 Gene

Paralogs for LOC101929122 Gene

No data available for Paralogs for LOC101929122 Gene

Variants for LOC101929122 Gene

Additional dbSNP identifiers (rs#s) for LOC101929122 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929122 Gene

Variant ID Type Subtype PubMed ID
esv2763604 CNV gain 21179565
nsv1019191 CNV gain 25217958
nsv1073603 CNV deletion 25765185
nsv1119090 CNV deletion 24896259
nsv830850 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929122 Gene

Disorders for LOC101929122 Gene

No disorders were found for LOC101929122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929122 Gene

Publications for LOC101929122 Gene

No publications were found for LOC101929122 Gene.

No data available for Mastermind for LOC101929122 Gene

Products for LOC101929122 Gene

Sources for LOC101929122 Gene