LOC101929117 Gene (RNA Gene)

Uncharacterized LOC101929117

GC10M026577
GIFtS:
7

Aliases for LOC101929117 Gene

Subcategory (RNA class) for LOC101929117 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101929117 Gene

  • Uncharacterized LOC101929117 3
  • NONHSAG005440 94
  • HSALNG0076803 169
  • Lnc-ABI1-3 170

External Ids for LOC101929117 Gene

Previous GeneCards Identifiers for LOC101929117 Gene

  • GC10U901744
  • GC10M026867

Summaries for LOC101929117 Gene

GeneCards Summary for LOC101929117 Gene

LOC101929117 (Uncharacterized LOC101929117) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929117 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929117 Gene

Genomics for LOC101929117 Gene

GeneHancer (GH) Regulatory Elements for LOC101929117 Gene

Promoters and enhancers for LOC101929117 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J026573 Enhancer 1 Ensembl ENCODE dbSUPER 0.6 +4.9 4902 3 CREM ZNF680 IKZF1 TRIM22 IKZF2 PKNOX1 BCL11A RUNX3 BMI1 NR2F1 LOC101929117 lnc-ABI1-9
GH10J026571 Enhancer 0.6 Ensembl 0.4 +7.5 7501 0.2 SP1 CEBPG CEBPA RXRA FOXA2 JUND ATF3 YY1 ZBTB33 HNF4A lnc-ABI1-9 LOC101929117
GH10J026584 Enhancer 0.3 Ensembl 0.4 -5.7 -5699 0.6 CEBPB FAM238A LOC101929117 ENSG00000236894
GH10J026589 Enhancer 0.2 Ensembl 0.4 -9.8 -9799 0.4 FAM238A LOC101929117 ENSG00000236894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929117 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929117 Gene

Genomic Locations for LOC101929117 Gene
chr10:26,577,376-26,579,402
(GRCh38/hg38)
Size:
2,027 bases
Orientation:
Minus strand
chr10:26,866,605-26,868,024
(GRCh37/hg19)
Size:
1,420 bases
Orientation:
Minus strand

Genomic View for LOC101929117 Gene

Genes around LOC101929117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929117 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101929117 Gene

Proteins for LOC101929117 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101929117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929117 Gene

Domains & Families for LOC101929117 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929117 Gene

Function for LOC101929117 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929117 Gene

Localization for LOC101929117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929117 Gene

Pathways & Interactions for LOC101929117 Gene

PathCards logo

SuperPathways for LOC101929117 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929117 Gene

Drugs & Compounds for LOC101929117 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101929117 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101929117 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(7) RNACentral transcripts :
(5) NONCODE transcripts :
(4) LncBook transcripts :
(5) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929117 Gene

No ASD Table

Relevant External Links for LOC101929117 Gene

GeneLoc Exon Structure for
LOC101929117

Expression for LOC101929117 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929117 Gene

mRNA expression in normal human tissues for LOC101929117 Gene
mRNA expression by GTEx for LOC101929117 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101929117 Gene

This gene is overexpressed in Testis (x30.9) and Whole Blood (x9.7).
genes like me logo Genes that share expression patterns with LOC101929117: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929117 Gene

Orthologs for LOC101929117 Gene

No data available for Orthologs and Evolution for LOC101929117 Gene

Paralogs for LOC101929117 Gene

No data available for Paralogs for LOC101929117 Gene

Variants for LOC101929117 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC101929117 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1002674344 -- 26,580,809(-) G/T upstream_transcript_variant
rs1002747702 -- 26,580,542(-) G/A upstream_transcript_variant
rs1004178972 -- 26,580,578(-) A/G upstream_transcript_variant
rs1005590448 -- 26,579,114(-) TATATATATAT/TATATATATATAT intron_variant
rs1006566007 -- 26,580,853(-) C/G/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101929117 Gene

Disorders for LOC101929117 Gene

No disorders were found for LOC101929117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929117 Gene

Publications for LOC101929117 Gene

No publications were found for LOC101929117 Gene.

No data available for External Links for LOC101929117 Gene

Products for LOC101929117 Gene

Sources for LOC101929117 Gene