Aliases for LOC101929106 Gene

Subcategory (RNA class) for LOC101929106 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC101929106 Gene

  • Uncharacterized LOC101929106 3
  • Novel Transcript 5
  • NONHSAG036934 92
  • Lnc-MASP1-1 168
  • AC007920.1 5

External Ids for LOC101929106 Gene

Previous GeneCards Identifiers for LOC101929106 Gene

  • GC03U901919

Summaries for LOC101929106 Gene

GeneCards Summary for LOC101929106 Gene

LOC101929106 (Uncharacterized LOC101929106) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929106 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929106 Gene

Genomics for LOC101929106 Gene

GeneHancer (GH) Regulatory Elements for LOC101929106 Gene

Promoters and enhancers for LOC101929106 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J187207 Enhancer 0.5 Ensembl 500.7 +0.3 328 0.2 ZNF585B ZNF316 MAFF MAFK MAFG ZBTB7B TRIM28 ZFP36 EMSY HSALNG0031410 LOC101929106 RTP1
GH03J187208 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 -2.5 -2459 5 TEAD4 ZBTB11 ZNF623 HES1 CTBP1 RBM25 HDAC3 NR2F2 NCOR1 ZNF585B HSALNG0031410 TBCCD1 MASP1 RTP1 RTP4 LOC101929106 LOC105374260
GH03J187197 Promoter/Enhancer 0.8 EPDnew Ensembl 0.4 +10.1 10128 0.6 EP300 RFX1 MXI1 BMI1 RTP1 LOC101929106
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929106 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929106 Gene

Genomic Locations for LOC101929106 Gene
chr3:187,197,090-187,207,629
(GRCh38/hg38)
Size:
10,540 bases
Orientation:
Minus strand
chr3:186,914,878-186,925,417
(GRCh37/hg19)
Size:
10,540 bases
Orientation:
Minus strand

Genomic View for LOC101929106 Gene

Genes around LOC101929106 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929106 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929106 Gene

Proteins for LOC101929106 Gene

Post-translational modifications for LOC101929106 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929106 Gene

Domains & Families for LOC101929106 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929106 Gene

Function for LOC101929106 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929106 Gene

Localization for LOC101929106 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929106 Gene

Pathways & Interactions for LOC101929106 Gene

PathCards logo

SuperPathways for LOC101929106 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101929106 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929106 Gene

Drugs & Compounds for LOC101929106 Gene

No Compound Related Data Available

Transcripts for LOC101929106 Gene

mRNA/cDNA for LOC101929106 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929106 Gene

No ASD Table

Relevant External Links for LOC101929106 Gene

GeneLoc Exon Structure for
LOC101929106

Expression for LOC101929106 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929106 Gene

genes like me logo Genes that share expression patterns with LOC101929106: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929106 Gene

Orthologs for LOC101929106 Gene

Evolution for LOC101929106 Gene

ENSEMBL:
Gene Tree for LOC101929106 (if available)
TreeFam:
Gene Tree for LOC101929106 (if available)

No data available for Orthologs for LOC101929106 Gene

Paralogs for LOC101929106 Gene

No data available for Paralogs for LOC101929106 Gene

Variants for LOC101929106 Gene

Additional dbSNP identifiers (rs#s) for LOC101929106 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101929106 Gene

Variant ID Type Subtype PubMed ID
esv23875 CNV gain 19812545
esv3599006 CNV loss 21293372
nsv1004008 CNV gain 25217958
nsv1014596 CNV gain 25217958
nsv4158 CNV insertion 18451855
nsv508264 CNV deletion 20534489
nsv592710 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929106 Gene

Disorders for LOC101929106 Gene

No disorders were found for LOC101929106 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929106 Gene

Publications for LOC101929106 Gene

No publications were found for LOC101929106 Gene.

No data available for Mastermind for LOC101929106 Gene

Products for LOC101929106 Gene

Sources for LOC101929106 Gene