Aliases for LOC101929099 Gene

Data sources for LOC101929099 Gene:

Subcategory (RNA class) for LOC101929099 Gene

lncRNA

Aliases for LOC101929099 Gene

External Ids for LOC101929099 Gene

Previous GeneCards Identifiers for LOC101929099 Gene

  • GC01U903640

Summaries for LOC101929099 Gene

GeneCards Summary for LOC101929099 Gene

LOC101929099 (Uncharacterized LOC101929099) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC101929099 Gene

  • Metazoan signal recognition particle RNA
  • microRNA mir-562

Additional gene information for LOC101929099 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC101929099 Gene

Genomics for LOC101929099 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929099 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J117058 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 256.3 +0.4 444 4.6 ZSCAN16 TBP ZBTB10 SP1 BCL11A FEZF1 NR2C1 MNT SMAD5 ETS1 TTF2 LOC101929099 HSALNG0006363 WDR3 GDAP2 MAN1A2 ATP1A1-AS1 CD101 TRIM45
GH01J116736 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11.2 +321.9 321910 4.6 BCL11A NR2C1 CTCF REST IRF4 TRIM22 EBF1 SMC3 RAD21 RFX5 TTF2 LOC101929099 CD101 IGSF3 ATP1A1 CD2 NEFHP1 lnc-IGSF3-3 piR-31508-004
GH01J116721 Enhancer 0.8 Ensembl ENCODE 11.1 +338.4 338423 1.3 ARNT ZEB2 ZNF316 ZBTB40 NFE2 CTCF MAFG MAFF ATF4 MEIS2 LINC02868 LOC101929099 TTF2 CD2 MIR320B1 IGSF3 CD101 GAPDHP64 piR-31508-004
GH01J117035 Enhancer 0.6 Ensembl 12.5 +24.8 24765 0.8 CTCF REST RAD51 NRF1 ESRRA L3MBTL2 USF2 HDAC1 MITF USF1 LOC101929099 TTF2 CD101 PTGFRN LINC02868 CD58 RF00017-304 piR-55223
GH01J117038 Enhancer 0.3 Ensembl 12.5 +22.3 22265 0.6 HLF LOC101929099 TTF2 CD101 PTGFRN LINC02868 CD58 piR-55223 RF00017-304
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929099 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929099 Gene

Latest Assembly
chr1:117,023,491-117,060,966
(GRCh38/hg38)
Size:
37,476 bases
Orientation:
Minus strand

Previous Assembly
chr1:117,568,104-117,602,112
(GRCh37/hg19 by Entrez Gene)
Size:
34,009 bases
Orientation:
Minus strand

chr1:117,568,104-117,602,112
(GRCh37/hg19 by Ensembl)
Size:
34,009 bases
Orientation:
Minus strand

Genomic View for LOC101929099 Gene

Genes around LOC101929099 on UCSC Golden Path with GeneCards custom track
LOC101929099 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929099 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929099 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929099 Gene

Proteins for LOC101929099 Gene

Post-translational modifications for LOC101929099 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929099 Gene

Domains & Families for LOC101929099 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929099 Gene

Function for LOC101929099 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929099 Gene

Localization for LOC101929099 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929099 Gene

Pathways & Interactions for LOC101929099 Gene

PathCards logo

SuperPathways for LOC101929099 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929099 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929099 Gene

Drugs & Compounds for LOC101929099 Gene

No Compound Related Data Available

Transcripts for LOC101929099 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929099 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000002C3A3_9606 lncRNA 1818 4

RefSeq: NR_110786,

Ensembl: ENST00000445523 (view in UCSC) ,

LNCipedia: lnc-TRIM45-1:1,

NONCODE: NONHSAT005462.2,

URS0000418A4A_9606 lncRNA 622 3

Ensembl: ENST00000421254 (view in UCSC) ,

LNCipedia: lnc-TRIM45-1:2,

NONCODE: NONHSAT005464.2,

URS00009B1409_9606 lncRNA 1809 3

LncBook: HSALNT0013337,

LNCipedia: lnc-TRIM45-1:3,

NONCODE: NONHSAT005463.2,

URS0000D58A99_9606 lncRNA 3822 2

LncBook: HSALNT0013327,

LNCipedia: lnc-TRIM45-1:12,

URS0000D59F29_9606 lncRNA 2964 2

LncBook: HSALNT0013329,

LNCipedia: lnc-TRIM45-1:4,

LOC101929099 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929099 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929099 Gene

No ASD Table

Relevant External Links for LOC101929099 Gene

GeneLoc Exon Structure for
LOC101929099

Expression for LOC101929099 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929099 Gene

genes like me logo Genes that share expression patterns with LOC101929099: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929099 Gene

Orthologs for LOC101929099 Gene

Evolution for LOC101929099 Gene

ENSEMBL:
Gene Tree for LOC101929099 (if available)
TreeFam:
Gene Tree for LOC101929099 (if available)

No data available for Orthologs for LOC101929099 Gene

Paralogs for LOC101929099 Gene

No data available for Paralogs for LOC101929099 Gene

Variants for LOC101929099 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101929099 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs12093834 Benign: not provided 117,025,878(-) G/A
NM_001256106.2(CD101):c.2798G>A (p.Arg933Gln)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT
rs138020050 Benign: not provided 117,025,888(-) C/A
NM_001256106.2(CD101):c.2808C>A (p.Leu936=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS
rs34248572 Benign: not provided 117,034,009(-) C/T
NM_001256106.2(CD101):c.2974C>T (p.Arg992Trp)
MISSENSE
rs34512192 Benign: not provided 117,033,990(-) A/G
NM_001256106.2(CD101):c.2955A>G (p.Ser985=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929099 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101929099 Gene

Variant ID Type Subtype PubMed ID
esv2675695 CNV deletion 23128226
esv2716629 CNV deletion 23290073
esv3587307 CNV loss 21293372
nsv1009706 CNV gain 25217958
nsv518833 CNV loss 19592680
nsv831159 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929099 Gene

Disorders for LOC101929099 Gene

No disorders were found for LOC101929099 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929099 Gene

Publications for LOC101929099 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101929099 Gene

Products for LOC101929099 Gene

Sources for LOC101929099 Gene