Aliases for LOC101929066 Gene

Subcategory (RNA class) for LOC101929066 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LOC101929066 Gene

  • Uncharacterized LOC101929066 3
  • NONHSAG049656 94
  • HSALNG0063701 169
  • Lnc-NAT1-3 170

External Ids for LOC101929066 Gene

Previous GeneCards Identifiers for LOC101929066 Gene

  • GC08U901760
  • GC08P017949

Summaries for LOC101929066 Gene

GeneCards Summary for LOC101929066 Gene

LOC101929066 (Uncharacterized LOC101929066) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929066 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929066 Gene

Genomics for LOC101929066 Gene

GeneHancer (GH) Regulatory Elements for LOC101929066 Gene

Promoters and enhancers for LOC101929066 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J018081 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.2 -1186 5 ZNF785 ZBTB40 SP1 SREBF1 SIX5 ZBTB6 RBPJ POLR2A USF2 NR2F1 ASAH1 ENSG00000245281 LOC101929066 lnc-FGL1-2 CNOT7 ENSG00000253384 MTUS1 RF00017-6860
GH08J018091 Enhancer 0.4 Ensembl 0.4 +7.0 7033 0.2 SAP130 KDM6A HNF4A LOC100133073 ENSG00000245281 LOC101929066 ENSG00000286542
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929066 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929066 Gene

Genomic Locations for LOC101929066 Gene
chr8:18,084,868-18,097,651
(GRCh38/hg38)
Size:
12,784 bases
Orientation:
Plus strand
chr8:17,942,377-17,953,903
(GRCh37/hg19)
Size:
11,527 bases
Orientation:
Plus strand

Genomic View for LOC101929066 Gene

Genes around LOC101929066 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929066 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929066 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929066 Gene

Proteins for LOC101929066 Gene

Post-translational modifications for LOC101929066 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929066 Gene

Domains & Families for LOC101929066 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929066 Gene

Function for LOC101929066 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929066 Gene

Localization for LOC101929066 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929066 Gene

Pathways & Interactions for LOC101929066 Gene

PathCards logo

SuperPathways for LOC101929066 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929066 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929066 Gene

Drugs & Compounds for LOC101929066 Gene

No Compound Related Data Available

Transcripts for LOC101929066 Gene

mRNA/cDNA for LOC101929066 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(14) RNACentral transcripts :
(11) LNCipedia transcripts :
(7) NONCODE transcripts :
(5) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929066 Gene

No ASD Table

Relevant External Links for LOC101929066 Gene

GeneLoc Exon Structure for
LOC101929066

Expression for LOC101929066 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929066 Gene

genes like me logo Genes that share expression patterns with LOC101929066: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929066 Gene

Orthologs for LOC101929066 Gene

No data available for Orthologs and Evolution for LOC101929066 Gene

Paralogs for LOC101929066 Gene

No data available for Paralogs for LOC101929066 Gene

Variants for LOC101929066 Gene

Sequence variations from dbSNP and Humsavar for LOC101929066 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs139001299 uncertain-significance, Farber disease 18,084,159(+) C/T upstream_transcript_variant
rs147896487 pathogenic, Rolandic epilepsy 18,084,767(+) C/G upstream_transcript_variant
rs200503438 uncertain-significance, Farber disease, not provided 18,084,064(+) T/C upstream_transcript_variant
rs201935182 uncertain-significance, Farber disease 18,084,096(+) G/A upstream_transcript_variant
rs34466559 likely-benign, Farber disease 18,084,285(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101929066 Gene

Variant ID Type Subtype PubMed ID
dgv7124n100 CNV gain 25217958
esv2157284 CNV deletion 18987734
esv2511529 CNV insertion 19546169
esv3304768 CNV mobile element insertion 20981092
esv3616511 CNV gain 21293372
nsv1026366 CNV gain 25217958
nsv522647 CNV loss 19592680
nsv610713 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101929066 Gene

Disorders for LOC101929066 Gene

No disorders were found for LOC101929066 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929066 Gene

Publications for LOC101929066 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G … Peterson K (Molecular vision 2002) 3 56
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 56

No data available for External Links for LOC101929066 Gene

Products for LOC101929066 Gene

Sources for LOC101929066 Gene