Aliases for LOC101929066 Gene

Data sources for LOC101929066 Gene:

Subcategory (RNA class) for LOC101929066 Gene

lncRNA

Aliases for LOC101929066 Gene

External Ids for LOC101929066 Gene

Previous GeneCards Identifiers for LOC101929066 Gene

  • GC08U901760
  • GC08P017949

Summaries for LOC101929066 Gene

GeneCards Summary for LOC101929066 Gene

LOC101929066 (Uncharacterized LOC101929066) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101929066 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101929066 Gene

Genomics for LOC101929066 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101929066 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J018081 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 255.4 -0.7 -672 5.4 ZSCAN16 TBP ZBTB10 SP1 MXD4 CEBPA SIX5 NR2C1 MNT IKZF1 ASAH1 LOC101929066 lnc-FGL1-2 CNOT7 MTUS1 HSALNG0063698 PCM1
GH08J018123 Enhancer 1.1 Ensembl ENCODE 11.4 +38.3 38347 3 TBP MNT IKZF1 HES1 MBD2 NONO ARNT ZNF395 GTF2E2 NFATC3 LOC101929066 ASAH1 MTMR7 MTUS1 HSALNG0063702 piR-31937-238 ENSG00000286542 NAT1
GH08J018061 Enhancer 0.7 ENCODE dbSUPER 11.6 -22.6 -22587 0.2 HOMEZ ELF1 GABPA HNF4A ZBTB40 GABPB1 RXRA HNF4G HMBOX1 NFIC ASAH1 LOC101929066 lnc-FGL1-2 HSALNG0063698 PCM1
GH08J018053 Enhancer 0.6 dbSUPER 11.6 -29.6 -29625 2.8 TAL1 HDAC2 TCF12 MTA2 TEAD4 ARID1B CEBPB DPF2 CBFA2T2 PKNOX1 ASAH1 LOC101930275 LOC101929066 PCM1 HSALNG0063698
GH08J018060 Enhancer 0.2 dbSUPER 11.6 -23.8 -23812 0.4 ASAH1 LOC101929066 LOC101930275 lnc-FGL1-2 HSALNG0063698 PCM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101929066 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101929066 Gene

Latest Assembly
chr8:18,084,154-18,126,938
(GRCh38/hg38)
Size:
42,785 bases
Orientation:
Plus strand

Previous Assembly
chr8:17,942,377-17,955,160
(GRCh37/hg19 by Entrez Gene)
Size:
12,784 bases
Orientation:
Plus strand

chr8:17,942,377-17,953,903
(GRCh37/hg19 by Ensembl)
Size:
11,527 bases
Orientation:
Plus strand

Genomic View for LOC101929066 Gene

Genes around LOC101929066 on UCSC Golden Path with GeneCards custom track
LOC101929066 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101929066 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929066 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929066 Gene

Proteins for LOC101929066 Gene

Post-translational modifications for LOC101929066 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929066 Gene

Domains & Families for LOC101929066 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101929066 Gene

Function for LOC101929066 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929066 Gene

Localization for LOC101929066 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929066 Gene

Pathways & Interactions for LOC101929066 Gene

PathCards logo

SuperPathways for LOC101929066 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101929066 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101929066 Gene

Drugs & Compounds for LOC101929066 Gene

No Compound Related Data Available

Transcripts for LOC101929066 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101929066 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000058CEE1_9606 lncRNA 817 4

Ensembl: ENST00000517747 (view in UCSC) ,

LncBook: HSALNT0133644,

LNCipedia: lnc-NAT1-3:15,

NONCODE: NONHSAT125328.2,

URS000057397E_9606 lncRNA 646 4

Ensembl: ENST00000517798 (view in UCSC) ,

LncBook: HSALNT0133649,

LNCipedia: lnc-NAT1-3:23,

NONCODE: NONHSAT125331.2,

URS000053D99D_9606 lncRNA 451 4

RefSeq: NR_125430,

Ensembl: ENST00000505114 (view in UCSC) ,

LNCipedia: lnc-NAT1-3:10,

NONCODE: NONHSAT125326.2,

URS00007E3630_9606 lncRNA 2309 2

RefSeq: NR_125429,

LNCipedia: lnc-NAT1-3:14,

URS00002FC7E4_9606 lncRNA 1057 2

Ensembl: ENST00000499554 (view in UCSC) ,

LNCipedia: lnc-NAT1-3:11,

LOC101929066 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101929066 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929066 Gene

No ASD Table

Relevant External Links for LOC101929066 Gene

GeneLoc Exon Structure for
LOC101929066

Expression for LOC101929066 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101929066 Gene

genes like me logo Genes that share expression patterns with LOC101929066: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929066 Gene

Orthologs for LOC101929066 Gene

Evolution for LOC101929066 Gene

ENSEMBL:
Gene Tree for LOC101929066 (if available)
TreeFam:
Gene Tree for LOC101929066 (if available)

No data available for Orthologs for LOC101929066 Gene

Paralogs for LOC101929066 Gene

No data available for Paralogs for LOC101929066 Gene

Variants for LOC101929066 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101929066 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101929066 Gene

Variant ID Type Subtype PubMed ID
dgv7124n100 CNV gain 25217958
esv2157284 CNV deletion 18987734
esv2511529 CNV insertion 19546169
esv3304768 CNV mobile element insertion 20981092
esv3616511 CNV gain 21293372
nsv1026366 CNV gain 25217958
nsv522647 CNV loss 19592680
nsv610713 CNV loss 21841781

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101929066 Gene

Disorders for LOC101929066 Gene

No disorders were found for LOC101929066 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101929066 Gene

Publications for LOC101929066 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G … Peterson K (Molecular vision 2002) 3
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3

No data available for Mastermind for LOC101929066 Gene

Products for LOC101929066 Gene

Sources for LOC101929066 Gene