Aliases for LOC101928994 Gene

Subcategory (RNA class) for LOC101928994 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC101928994 Gene

  • Uncharacterized LOC101928994 3
  • Novel Transcript, Antisense To HKDC1 5
  • Lnc-TACR2-2 168
  • AL596223.1 5

External Ids for LOC101928994 Gene

Previous GeneCards Identifiers for LOC101928994 Gene

  • GC10U901708

Summaries for LOC101928994 Gene

GeneCards Summary for LOC101928994 Gene

LOC101928994 (Uncharacterized LOC101928994) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928994 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928994 Gene

Genomics for LOC101928994 Gene

GeneHancer (GH) Regulatory Elements for LOC101928994 Gene

Promoters and enhancers for LOC101928994 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J069231 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 500.7 -0.3 -250 1.7 JUND FOS FOSL2 MAFK MAX NFE2L2 EGR2 ZNF449 LOC101928994 HK1 ENSG00000231748 HKDC1 CCAR1 piR-33270-005
GH10J069179 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 6 +51.8 51837 3.3 EP300 FOXK2 ZBTB40 ZNF217 SIN3A NRF1 MYC TCF12 POLR2G USF1 SUPV3L1 DDX50 CCAR1 DDX21 SAR1A HNRNPH3 VPS26A HKDC1 RPL26P27 TYSND1
GH10J069122 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.9 +107.9 107889 3.6 HNRNPK CTCF ZSCAN5C SIN3A NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 VPS26A lnc-TACR2-8 SUPV3L1 HNRNPH3 LOC101928994 PBLD HKDC1 SRGN DDX21 piR-34822-044
GH10J069085 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 +141.1 141097 11.6 ZBTB40 CTCF SIN3A SP1 BCLAF1 GTF2E2 PHB2 ZBTB5 EP300 POLR2A SRGN DDX21 DDX50 SUPV3L1 HKDC1 PBLD LOC101928994 STOX1 TACR2 VPS26A
GH10J069202 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.1 +28.0 28034 4.7 EP300 RELA ZNF384 CEBPG CEBPB MEF2B POLR2H TBP ZNF589 NFATC3 ENSG00000231748 HK1 LOC101928994 SUPV3L1 PBLD RF01045-019
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928994 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928994 Gene

Genomic Locations for LOC101928994 Gene
chr10:69,215,333-69,232,490
(GRCh38/hg38)
Size:
17,158 bases
Orientation:
Minus strand
chr10:70,975,089-70,992,246
(GRCh37/hg19)
Size:
17,158 bases
Orientation:
Minus strand

Genomic View for LOC101928994 Gene

Genes around LOC101928994 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928994 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928994 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928994 Gene

Proteins for LOC101928994 Gene

Post-translational modifications for LOC101928994 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928994 Gene

Domains & Families for LOC101928994 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928994 Gene

Function for LOC101928994 Gene

Phenotypes From GWAS Catalog for LOC101928994 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928994 Gene

Localization for LOC101928994 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928994 Gene

Pathways & Interactions for LOC101928994 Gene

PathCards logo

SuperPathways for LOC101928994 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101928994 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928994 Gene

Drugs & Compounds for LOC101928994 Gene

No Compound Related Data Available

Transcripts for LOC101928994 Gene

mRNA/cDNA for LOC101928994 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928994 Gene

No ASD Table

Relevant External Links for LOC101928994 Gene

GeneLoc Exon Structure for
LOC101928994

Expression for LOC101928994 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928994 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928994

genes like me logo Genes that share expression patterns with LOC101928994: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928994 Gene

Orthologs for LOC101928994 Gene

Evolution for LOC101928994 Gene

ENSEMBL:
Gene Tree for LOC101928994 (if available)
TreeFam:
Gene Tree for LOC101928994 (if available)

No data available for Orthologs for LOC101928994 Gene

Paralogs for LOC101928994 Gene

No data available for Paralogs for LOC101928994 Gene

Variants for LOC101928994 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101928994 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
709947 Benign: not provided 69,227,340(-) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LOC101928994 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928994 Gene

Variant ID Type Subtype PubMed ID
esv275556 CNV loss 21479260
esv3891855 CNV loss 25118596
nsv508589 CNV deletion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928994 Gene

Disorders for LOC101928994 Gene

No disorders were found for LOC101928994 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928994 Gene

Publications for LOC101928994 Gene

  1. Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies. (PMID: 23903356) Hayes MG … HAPO Study Cooperative Research Group (Diabetes 2013) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC101928994 Gene

Products for LOC101928994 Gene

Sources for LOC101928994 Gene