Aliases for LOC101928994 Gene

Data sources for LOC101928994 Gene:

RNA type for LOC101928994 Gene

lncRNA

Aliases for LOC101928994 Gene

External Ids for LOC101928994 Gene

Previous GeneCards Identifiers for LOC101928994 Gene

  • GC10U901708

Summaries for LOC101928994 Gene

GeneCards Summary for LOC101928994 Gene

LOC101928994 (Uncharacterized LOC101928994) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928994 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928994 Gene

Genomics for LOC101928994 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928994 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J069231 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 250.7 +0.3 275 1.7 JUND MAX MAFK NFE2L2 EGR2 LOC101928994 ENSG00000231748 HK1 HKDC1 CCAR1
GH10J069179 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 6 +52.4 52361 3.3 BCLAF1 SP1 ZNF207 NCOR1 MYC SIX5 SSRP1 ZNF580 ZNF592 ZMYM3 SUPV3L1 CCAR1 DDX50 HNRNPH3 TYSND1 SAR1A DDX21 RPL26P27 VPS26A HKDC1
GH10J069122 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.9 +108.4 108414 3.6 SP1 MYC NCOR1 IKZF1 ZNF600 ZNF580 ZNF592 KLF9 POLR2A ZNF10 VPS26A lnc-TACR2-8 CCAR1 HNRNPH3 DDX50 RPL26P27 SUPV3L1 LOC101928994 PBLD HKDC1
GH10J069085 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 +142.9 142889 9 BCLAF1 SP1 ZNF207 MYC NCOR1 ZNF654 IKZF1 ZNF592 ZMYM3 POLR2A SRGN DDX21 SUPV3L1 HKDC1 PBLD LOC101928994 TACR2 VPS26A NONHSAG006100.2 lnc-TACR2-5
GH10J069202 Enhancer 1 Ensembl ENCODE dbSUPER 6.1 +28.6 28560 4.7 CEBPB ZNF592 EP300 BHLHE40 ATF4 TCF12 PKNOX1 TBL1XR1 ATF3 ZNF687 HSALNG0078568 ENSG00000231748 HK1 LOC101928994 SUPV3L1 PBLD HKDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928994 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928994 Gene

Latest Assembly
chr10:69,213,238-69,233,015
(GRCh38/hg38)
Size:
19,778 bases
Orientation:
Minus strand

Previous Assembly
chr10:70,975,089-70,992,246
(GRCh37/hg19 by Entrez Gene)
Size:
17,158 bases
Orientation:
Minus strand

chr10:70,975,089-70,992,246
(GRCh37/hg19 by Ensembl)
Size:
17,158 bases
Orientation:
Minus strand

Genomic View for LOC101928994 Gene

Genes around LOC101928994 on UCSC Golden Path with GeneCards custom track
LOC101928994 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928994 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928994 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928994 Gene

Proteins for LOC101928994 Gene

Post-translational modifications for LOC101928994 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928994 Gene

Domains & Families for LOC101928994 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928994 Gene

Function for LOC101928994 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928994 Gene

Localization for LOC101928994 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928994 Gene

Pathways & Interactions for LOC101928994 Gene

PathCards logo

SuperPathways for LOC101928994 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928994 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928994 Gene

Drugs & Compounds for LOC101928994 Gene

No Compound Related Data Available

Transcripts for LOC101928994 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928994 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003597AC_9606 lncRNA 1938 3

RefSeq: NR_120648,

Ensembl: ENST00000450995 (view in UCSC) ,

LNCipedia: lnc-TACR2-2:1,

URS0001BCFC73_9606 lncRNA 4553 1

LncBook: HSALNT0163915,

URS0001BEC87A_9606 lncRNA 4494 1

LncBook: HSALNT0163914,

URS0001BF2433_9606 lncRNA 4451 1

LncBook: HSALNT0163913,

URS0001BDDDEE_9606 lncRNA 4329 1

LncBook: HSALNT0163916,

LOC101928994 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928994 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928994 Gene

No ASD Table

Relevant External Links for LOC101928994 Gene

GeneLoc Exon Structure for
LOC101928994

Expression for LOC101928994 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928994 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928994

genes like me logo Genes that share expression patterns with LOC101928994: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928994 Gene

Orthologs for LOC101928994 Gene

Evolution for LOC101928994 Gene

ENSEMBL:
Gene Tree for LOC101928994 (if available)
TreeFam:
Gene Tree for LOC101928994 (if available)

No data available for Orthologs for LOC101928994 Gene

Paralogs for LOC101928994 Gene

No data available for Paralogs for LOC101928994 Gene

Variants for LOC101928994 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101928994 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs74138158 Benign: not provided 69,227,340(-) C/T
NM_025130.4(HKDC1):c.197C>T (p.Thr66Ile)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928994 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928994 Gene

Variant ID Type Subtype PubMed ID
esv275556 CNV loss 21479260
esv3891855 CNV loss 25118596
nsv508589 CNV deletion 20534489

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928994 Gene

Disorders for LOC101928994 Gene

Additional Disease Information for LOC101928994

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101928994 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928994 Gene

Publications for LOC101928994 Gene

  1. Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies. (PMID: 23903356) Hayes MG … HAPO Study Cooperative Research Group (Diabetes 2013) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928994 Gene

Products for LOC101928994 Gene

Sources for LOC101928994 Gene