Aliases for LOC101928978 Gene

Subcategory (RNA class) for LOC101928978 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928978 Gene

  • Uncharacterized LOC101928978 3
  • NONHSAG038350.2 91
  • HSALNG0035600 164
  • Lnc-NKX6-1-2 165

External Ids for LOC101928978 Gene

Previous GeneCards Identifiers for LOC101928978 Gene

  • GC04U901689
  • GC04M084719
  • GC04M083968

Summaries for LOC101928978 Gene

GeneCards Summary for LOC101928978 Gene

LOC101928978 (Uncharacterized LOC101928978) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928978 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928978 Gene

Genomics for LOC101928978 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928978 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J084324 Enhancer 1.1 VISTA UCNEbase Ensembl 600.7 +0.7 660 2.2 EZH2 POLR2A RCOR1 SMARCA4 CHD2 LOC101928978 MN309174-511 lnc-NKX6-1-3 NKX6-1 GPAT3
GH04J084336 Enhancer 0.4 Ensembl 0.4 -11.4 -11439 0.4 FOXA1 NANOG POLR2A POU5F1 LOC101928978 KR153194-148 NKX6-1 lnc-NKX6-1-3 GPAT3
GH04J084338 Enhancer 0.4 Ensembl 0.4 -11.9 -11940 0.2 ZNF316 MAFF MAFK LOC101928978 KR153194-148 NKX6-1 lnc-NKX6-1-3 GPAT3
GH04J084312 Enhancer 0.3 UCNEbase 0.4 +12.9 12899 0.2 MN309174-511 LOC101928978 NKX6-1 lnc-NKX6-1-3 GPAT3
GH04J084285 Enhancer 0.3 Ensembl 0.3 +39.5 39460 0.6 TEAD4 SP1 piR-61240-199 ENSG00000250546 LOC101928978 ENSG00000214980 lnc-NKX6-1-3 NKX6-1 GPAT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928978 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928978 Gene

Genomic Locations for LOC101928978 Gene
chr4:83,796,436-84,325,561
(GRCh38/hg38)
Size:
529,126 bases
Orientation:
Minus strand
chr4:84,717,589-85,214,565
(GRCh37/hg19)
Size:
496,977 bases
Orientation:
Minus strand

Genomic View for LOC101928978 Gene

Genes around LOC101928978 on UCSC Golden Path with GeneCards custom track
LOC101928978 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928978 Gene

Proteins for LOC101928978 Gene

Post-translational modifications for LOC101928978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928978 Gene

Domains & Families for LOC101928978 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928978 Gene

Function for LOC101928978 Gene

Phenotypes From GWAS Catalog for LOC101928978 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928978 Gene

Localization for LOC101928978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928978 Gene

Pathways & Interactions for LOC101928978 Gene

PathCards logo

SuperPathways for LOC101928978 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928978 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928978 Gene

Drugs & Compounds for LOC101928978 Gene

No Compound Related Data Available

Transcripts for LOC101928978 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928978 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3E2F_9606 lncRNA 2838 4

RefSeq: NR_125909,

LncBook: HSALNT0074514,

LNCipedia: lnc-NKX6-1-2:5,

NONCODE: NONHSAT200159.1,

URS00008B8DD5_9606 lncRNA 738 3

LncBook: HSALNT0074511,

LNCipedia: lnc-NKX6-1-2:4,

NONCODE: NONHSAT097229.2,

URS00009BCBB3_9606 lncRNA 3673 1

NONCODE: NONHSAT200158.1,

LOC101928978 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928978 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928978 Gene

No ASD Table

Relevant External Links for LOC101928978 Gene

GeneLoc Exon Structure for
LOC101928978

Expression for LOC101928978 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928978 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928978 Gene

This gene is overexpressed in Colon - Transverse (x11.7), Testis (x8.4), Bladder (x8.3), Prostate (x7.0), and Cervix - Ectocervix (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928978

genes like me logo Genes that share expression patterns with LOC101928978: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928978 Gene

Orthologs for LOC101928978 Gene

No data available for Orthologs and Evolution for LOC101928978 Gene

Paralogs for LOC101928978 Gene

No data available for Paralogs for LOC101928978 Gene

Variants for LOC101928978 Gene

Additional dbSNP identifiers (rs#s) for LOC101928978 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928978 Gene

Variant ID Type Subtype PubMed ID
dgv5331n100 CNV gain 25217958
esv2661229 CNV deletion 23128226
esv2675849 CNV deletion 23128226
esv2760872 CNV loss 21179565
esv29778 CNV loss 19812545
esv3601208 CNV loss 21293372
esv3601214 CNV loss 21293372
esv3601215 CNV loss 21293372
esv3601216 CNV loss 21293372
esv998684 CNV deletion 20482838
nsv1124893 CNV duplication 24896259
nsv1124894 CNV duplication 24896259
nsv1154065 CNV duplication 26484159
nsv441895 CNV loss 18776908
nsv441896 CNV loss 18776908
nsv508294 CNV deletion 20534489
nsv514229 CNV loss 21397061
nsv524354 CNV loss 19592680
nsv594746 CNV loss 21841781
nsv822633 CNV loss 20364138
nsv829996 CNV gain 17160897
nsv967768 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928978 Gene

Disorders for LOC101928978 Gene

No disorders were found for LOC101928978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928978 Gene

Publications for LOC101928978 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928978 Gene

Products for LOC101928978 Gene

Sources for LOC101928978 Gene