Aliases for LOC101928977 Gene

Subcategory (RNA class) for LOC101928977 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101928977 Gene

  • Uncharacterized LOC101928977 3
  • NONHSAG002517 94
  • HSALNG0006296 169
  • Lnc-NHLH2-1 170

External Ids for LOC101928977 Gene

Previous GeneCards Identifiers for LOC101928977 Gene

  • GC01U903926

Summaries for LOC101928977 Gene

GeneCards Summary for LOC101928977 Gene

LOC101928977 (Uncharacterized LOC101928977) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928977 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928977 Gene

Genomics for LOC101928977 Gene

GeneHancer (GH) Regulatory Elements for LOC101928977 Gene

Promoters and enhancers for LOC101928977 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J115975 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.1 -104 4 POLR2A ZNF217 MIXL1 MYC ELF1 HLF L3MBTL2 MAX MNT ZNF280D SLC22A15 LOC101928977 ENSG00000237993 CASQ2 MAB21L3 IGSF3 ATP1A1
GH01J115969 Enhancer 0.8 Ensembl ENCODE 0.4 +7.8 7775 1.4 SP1 ZNF148 ZNF692 ZNF316 NRF1 ZXDB ZFP69B SNIP1 ZFP91 REST SLC22A15 ENSG00000237993 MAB21L3 lnc-SLC22A15-3 LOC101928977
GH01J115980 Enhancer 0.6 dbSUPER 0.4 -5.1 -5094 3.5 CTCF ZBTB6 RAD21 REST TRIM22 PATZ1 ZBTB11 ZNF766 SMARCA5 SMC3 SLC22A15 ENSG00000237993 CASQ2 MAB21L3 LOC101928977
GH01J116002 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 -25.8 -25824 3 ZIC2 PRDM10 ZNF629 ZNF692 RFX1 ZNF366 SLC22A15 MAB21L3 ENSG00000237993 LOC101928977
GH01J115986 Enhancer 0.6 Ensembl dbSUPER 0.4 -10.7 -10725 3.2 ZNF629 ZFHX2 FEZF1 ZNF843 PRDM6 SLC22A15 ENSG00000237993 CASQ2 ENSG00000207502 MAB21L3 LOC101928977
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928977 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928977 Gene

Genomic Locations for LOC101928977 Gene
chr1:115,920,768-115,977,276
(GRCh38/hg38)
Size:
56,509 bases
Orientation:
Minus strand

Genomic View for LOC101928977 Gene

Genes around LOC101928977 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928977 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928977 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928977 Gene

Proteins for LOC101928977 Gene

Post-translational modifications for LOC101928977 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928977 Gene

Domains & Families for LOC101928977 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928977 Gene

Function for LOC101928977 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928977 Gene

Localization for LOC101928977 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928977 Gene

Pathways & Interactions for LOC101928977 Gene

PathCards logo

SuperPathways for LOC101928977 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928977 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928977 Gene

Drugs & Compounds for LOC101928977 Gene

No Compound Related Data Available

Transcripts for LOC101928977 Gene

mRNA/cDNA for LOC101928977 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) RNACentral transcripts :
(5) LNCipedia transcripts :
(3) LncBook transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928977 Gene

No ASD Table

Relevant External Links for LOC101928977 Gene

GeneLoc Exon Structure for
LOC101928977

Expression for LOC101928977 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928977 Gene

Orthologs for LOC101928977 Gene

No data available for Orthologs and Evolution for LOC101928977 Gene

Paralogs for LOC101928977 Gene

No data available for Paralogs for LOC101928977 Gene

Variants for LOC101928977 Gene

Sequence variations from dbSNP and Humsavar for LOC101928977 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000031245 -- 115,929,756(-) A/G/T intron_variant
rs1000044864 -- 115,922,953(-) G/A/T intron_variant
rs1000208286 -- 115,973,030(-) T/C intron_variant
rs1000237386 -- 115,935,224(-) T/G intron_variant
rs1000491770 -- 115,933,936(-) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928977 Gene

Disorders for LOC101928977 Gene

No disorders were found for LOC101928977 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928977 Gene

Publications for LOC101928977 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LOC101928977 Gene

Products for LOC101928977 Gene

Sources for LOC101928977 Gene