LOC101928948 Gene (Pseudogene)

Collagen Alpha-1(I) Chain-Like

GC04P009531
GIFtS:
1
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Aliases for LOC101928948 Gene

Aliases for LOC101928948 Gene

  • Collagen Alpha-1(I) Chain-Like 3

External Ids for LOC101928948 Gene

Previous GeneCards Identifiers for LOC101928948 Gene

  • GC04U901724

Summaries for LOC101928948 Gene

GeneCards Summary for LOC101928948 Gene

LOC101928948 (Collagen Alpha-1(I) Chain-Like) is a Pseudogene.

Additional gene information for LOC101928948 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928948 Gene

Genomics for LOC101928948 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928948 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J009531 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 600.7 +0.7 745 2 CTCF BACH1 LARP7 ZNF143 ZIC2 PATZ1 REST RAD21 TRIM22 EZH2 ENSG00000284648 LOC101928948 lnc-DEFB131A-4 OR7E84P ENPP7P11 RF00017-4267 DEFB131A DRD5
GH04J009528 Enhancer 0.5 Ensembl 0.7 -2.4 -2384 1.5 PKNOX1 ZNF610 CEBPB MEIS2 ZNF384 OR7E84P ENPP7P11 OR7E86P OR7E83P LOC101928948 piR-34697-027 DEFB131A DRD5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928948 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928948 Gene

Genomic Locations for LOC101928948 Gene
chr4:9,532,046-9,536,462
(GRCh38/hg38)
Size:
4,417 bases
Orientation:
Plus strand

Genomic View for LOC101928948 Gene

Genes around LOC101928948 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928948 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928948 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928948 Gene

Proteins for LOC101928948 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928948 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928948 Gene

Domains & Families for LOC101928948 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928948 Gene

Function for LOC101928948 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928948 Gene

Localization for LOC101928948 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928948 Gene

Pathways & Interactions for LOC101928948 Gene

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SuperPathways for LOC101928948 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928948 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928948 Gene

Drugs & Compounds for LOC101928948 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928948 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928948 Gene

No ASD Table

Relevant External Links for LOC101928948 Gene

GeneLoc Exon Structure for
LOC101928948

No data available for mRNA/cDNA for LOC101928948 Gene

Expression for LOC101928948 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928948 Gene

Orthologs for LOC101928948 Gene

No data available for Orthologs and Evolution for LOC101928948 Gene

Paralogs for LOC101928948 Gene

No data available for Paralogs for LOC101928948 Gene

Variants for LOC101928948 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928948 Gene

Disorders for LOC101928948 Gene

No disorders were found for LOC101928948 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928948 Gene

Publications for LOC101928948 Gene

No publications were found for LOC101928948 Gene.

No data available for Mastermind for LOC101928948 Gene

Products for LOC101928948 Gene

Sources for LOC101928948 Gene