Aliases for LOC101928940 Gene

Subcategory (RNA class) for LOC101928940 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928940 Gene

  • Uncharacterized LOC101928940 3
  • NONHSAG009663.2 91
  • Lnc-C11orf71-1 165
  • HSALNG0087301 164

External Ids for LOC101928940 Gene

Previous GeneCards Identifiers for LOC101928940 Gene

  • GC11U901996

Summaries for LOC101928940 Gene

GeneCards Summary for LOC101928940 Gene

LOC101928940 (Uncharacterized LOC101928940) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928940 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928940 Gene

Genomics for LOC101928940 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928940 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J114377 Enhancer 0.6 Ensembl ENCODE 600.7 +1.8 1844 2 JUND FOS BATF POU5F1 SPI1 LOC101928940 RBM7 ENSG00000255663 C11orf71 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT
GH11J114379 Enhancer 0.3 Ensembl 600.7 +0.4 444 0.4 GATA2 LOC101928940 ENSG00000255663 RBM7 C11orf71 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT
GH11J114380 Enhancer 0.2 Ensembl 600.7 -0.5 -456 0.2 LOC101928940 RBM7 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT
GH11J114365 Enhancer 0.6 Ensembl ENCODE 0.4 +13.2 13195 2.8 POLR2A JUND CEBPB JUN RBM7 C11orf71 ENSG00000255663 ENSG00000270179 LOC107984391 LOC101928940 ENSG00000256947 ENSG00000256195 NNMT
GH11J114395 Enhancer 0.6 Ensembl 0.4 -16.0 -15956 0.8 CTCF TEAD4 FOXA1 HMBOX1 ZBTB17 RAD21 TCF12 TEAD3 CBFA2T2 MIXL1 ENSG00000256195 RBM7 C11orf71 LOC101928940 NNMT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928940 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928940 Gene

Genomic Locations for LOC101928940 Gene
chr11:114,360,635-114,380,045
(GRCh38/hg38)
Size:
19,411 bases
Orientation:
Minus strand

Genomic View for LOC101928940 Gene

Genes around LOC101928940 on UCSC Golden Path with GeneCards custom track
LOC101928940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928940 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928940 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928940 Gene

Proteins for LOC101928940 Gene

Post-translational modifications for LOC101928940 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928940 Gene

Domains & Families for LOC101928940 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928940 Gene

Function for LOC101928940 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928940 Gene

Localization for LOC101928940 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928940 Gene

Pathways & Interactions for LOC101928940 Gene

PathCards logo

SuperPathways for LOC101928940 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928940 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928940 Gene

Drugs & Compounds for LOC101928940 Gene

No Compound Related Data Available

Transcripts for LOC101928940 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928940 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B533_9606 lncRNA 3831 2

RefSeq: NR_120567,

LNCipedia: lnc-C11orf71-1:5,

URS00008BE480_9606 lncRNA 279 3

LncBook: HSALNT0181396,

LNCipedia: lnc-C11orf71-1:4,

NONCODE: NONHSAT024280.2,

URS00008B608C_9606 lncRNA 3841 2

LNCipedia: lnc-C11orf71-1:1,

NONCODE: NONHSAT024278.2,

URS00008BDC3C_9606 lncRNA 277 1

LNCipedia: lnc-C11orf71-1:2,

LOC101928940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928940 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928940 Gene

No ASD Table

Relevant External Links for LOC101928940 Gene

GeneLoc Exon Structure for
LOC101928940

Expression for LOC101928940 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928940 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928940

genes like me logo Genes that share expression patterns with LOC101928940: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928940 Gene

Orthologs for LOC101928940 Gene

No data available for Orthologs and Evolution for LOC101928940 Gene

Paralogs for LOC101928940 Gene

No data available for Paralogs for LOC101928940 Gene

Variants for LOC101928940 Gene

Additional dbSNP identifiers (rs#s) for LOC101928940 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928940 Gene

Disorders for LOC101928940 Gene

No disorders were found for LOC101928940 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928940 Gene

Publications for LOC101928940 Gene

  1. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson DG … Nicolae DL (Nature genetics 2011) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928940 Gene

Products for LOC101928940 Gene

Sources for LOC101928940 Gene